1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agattgtgcattgccatttaaacgtcttattttgtatgtttgctaatacttttaaatagttgggtctagcatgattaatttaatctttctgtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
species | Zea mays |
transcript | GRMZM2G062416_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTEST: gi|24773898|gb|CA409152.1|CA409152
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATT
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAGEST: gi|211296697|gb|FL391481.1|FL391481
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTTCCAGTGGTEST: gi|32908945|gb|CF013758.1|CF013758
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGT
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAGEST: gi|211449478|gb|FL373078.1|FL373078
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTTCCAGTGGEST: gi|78074248|gb|DV502682.1|DV502682
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGG
EST: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTG GTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
genomic: GGGAAGGCTTTATAGGTGCATCAGTGACAACATTGCTTTCTGCATTTGTGgtcagtaaat ... gtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
atacttttaaatagttgggtctagcatgattaatttaatctttctgtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
tctttctgt CT-rich tract
attaatttaatctttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattgtgcattgccatttaaacgtcttattttgtatgtttgctaatacttttaaatagttgggtctagcatgattaatttaatctttctgtattggcagGTTGCTAATTTCATGGGCCATTTCCAGTGGTTAACATGCCCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA