1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggaactatcccaaacatggcctaaaatgaactaaaatagagagactaaaaattagtctctagaaaacaaacacccccttaatgattgtgttgtgcaacagGGTGATTGTACTGGATAGCTGCTGCTGATATTGCAAGACAATGAAAGCTCATCAGCAGCAAGGTAATGCATCTGGCACAGGAGCAAAGACCAAATCTGGT
species | Zea mays |
transcript | GRMZM2G062230_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTTCCGTTTCATGCTCAGGATCGGCGAGATCTAGGGTCTCGATTTCAG GGTGATTGTACTGGATAGCTGCTGCTGATATTGCAAGACAATGAAAGCTCA
genomic: GGGTTCCGTTTCATGCTCAGGATCGGCGAGATCTAGGGTCTCGATTTCAGgtatgccccc ... tgtgcaacagGGTGATTGTACTGGATAGCTGCTGCTGATATTGCAAGACAATGAAAGCTCA
taaaaattagtctctagaaaacaaacacccccttaatgattgtgttgtgcaacagGGTGATTGTACTGGATAGCTGCTGCTGATATTGCAAGACAATGAAAGCTCATCAGCAGCAAGGTAATGCATCTGGCACAGGAGCAAAGACCAAATCTGGT
ttaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaactatcccaaacatggcctaaaatgaactaaaatagagagactaaaaattagtctctagaaaacaaacacccccttaatgattgtgttgtgcaacagGGTGATTGTACTGGATAGCTGCTGCTGATATTGCAAGACAATGAAAGCTCATCAGCAGCAAGGTAATGCATCTGGCACAGGAGCAAAGACCAAATCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - -ccaaaca
- - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - -actaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgattg