1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttcccattctaaagcgacaagtgcttatcaatgaaaatgccattctgcatgttgtcaatcctctctaattcaaatctacattgattctcttactgcagACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGATTTCTTCTATGCCCATGGCCAACTTTCAGATGCTTTCAAAAGCTACATCA
species | Zea mays |
transcript | GRMZM2G062210_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCCGACCAGCGCAAGGAGAAGCTCGAGAGCGAGCTCAATGGATACAGG ACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGATEST: gi|71775377|gb|DR973255.1|DR973255
genomic: GCGCCGACCAGCGCAAGGAGAAGCTCGAGAGCGAGCTCAATGGATACAGGgtgcggaaat ... cttactgcagACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGAT
EST: GCGCCGACCAGCGCAAGGAGAAGCTCGAGAGCGAGCTCAATGGATACAGG ACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGAT
genomic: GCGCCGACCAGCGCAAGGAGAAGCTCGAGAGCGAGCTCAATGGATACAGGgtgcggaaat ... cttactgcagACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGAT
tctgcatgttgtcaatcctctctaattcaaatctacattgattctcttactgcagACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGATTTCTTCTATGCCCATGGCCAACTTTCAGATGCTTTCAAAAGCTACATCA
ctcttac putative branch site (score: 150)
ttctcttact CT-rich tract
taattcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcccattctaaagcgacaagtgcttatcaatgaaaatgccattctgcatgttgtcaatcctctctaattcaaatctacattgattctcttactgcagACTAACTTAATCAAAGAGAGCATCAGAATGGGCTACAATGACATTGGTGATTTCTTCTATGCCCATGGCCAACTTTCAGATGCTTTCAAAAGCTACATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -ccattct
- - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - caatgaaa
- - - - - - - - - - - - - - - - - - - - gccattc
- - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattct