Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggttaagatatatatttctgctggctgtgttttttgttgcgaatatgtcaggctgaggtttgtccttccataactcactgtttttgcccacgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC

Basic information

species Zea mays
transcript GRMZM2G062076_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 3'ss of exon 1
--tggttaagatatatatttctgctggctgtgttttttgttgcga---atatgtcaggctgaggtttgtccttccataactcactgtttttgcccacgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC
    |||| ||| | | | ||   ||  |||| |  |||| |  |     || |  | |  |  | |||||    | |  | ||  ||    || |  ||| ||| ||||| || ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| || ||||| ||||||
aaaagttacgat-tctctctcaaatga-tgtgatcattgtagaaatatgcatctttgtccaacatatgtccaggaa-atttaacccttccctccta--tgtccagGAAAGAAGGACAACATACCCAAGAAGAGTTACAGAAGAGGAATCTCAGGGACGAACTTGAGGAGCGTGAGAGGAAGCACTACTCGTCAAAGGACAAGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9731495|gb|BE510247.1|BE510247
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     CCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079007|gb|FL148946.1|FL148946
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|22542576|gb|BU093014.1|BU093014
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211540434|gb|FL210075.1|FL210075
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|28568978|gb|CB280853.1|CB280853
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079013|gb|FL148952.1|FL148952
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|8367292|gb|BE050237.1|BE050237
EST:     CAGAAGTTCTGCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211076275|gb|FL148944.1|FL148944
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211094642|gb|FL030914.1|FL030914
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGG-CAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     CTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|27522103|gb|CA989209.1|CA989209
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211540431|gb|FL210072.1|FL210072
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079006|gb|FL148945.1|FL148945
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211081741|gb|FL148961.1|FL148961
EST:     CAGAAGTTCTCMTCCCGCGWCCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|19822434|gb|BQ048458.1|BQ048458
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGTGGTGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|60348926|gb|DN215899.1|DN215899
EST:     CGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     GCGCACACCTCCCTCAAAGCCAAGA                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGG
genomic: GCGCACACCTCCCTC-AAGCCAAG-gtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGG
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     GCGCACACCTCCCTCAAAGCCAAGA                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGG
genomic: GCGCACACCTCCCTC-AAGCCAAG-gtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGG
EST: gi|211540435|gb|FL210076.1|FL210076
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211540429|gb|FL210070.1|FL210070
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAB                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     GACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: GACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079019|gb|FL148958.1|FL148958
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGATAGAGGAATCTCAGGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGA-AGAGGAATCTCAGGG
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211076273|gb|FL148942.1|FL148942
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|9742832|gb|BE518980.1|BE518980
EST:     CAGAAG-TCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGTA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|22546523|gb|BU098834.1|BU098834
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     CGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079009|gb|FL148948.1|FL148948
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|19770098|gb|BQ034819.1|BQ034819
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211276946|gb|FL388217.1|FL388217
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|26457681|gb|CA829264.1|CA829264
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079014|gb|FL148953.1|FL148953
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|148958811|gb|EE010417.2|EE010417
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|211079010|gb|FL148949.1|FL148949
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 890

CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 822

CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1009

CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 831

CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... acgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcaggctgaggtttgtccttccataactcactgtttttgcccacgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC
                           aactcac  putative branch site (score: 831)
                                  tgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tggttaagatatatatttctgctggctgtgttttttgttgcgaatatgtcaggctgaggtttgtccttccataactcactgtttttgcccacgtgtacagAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGGGAGGAACTTGAGGAACGTGAGCGCAAGCACTACTCTTCCAAGGATAAGTCC

- - - - - - - - -tctgctg
- - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - -tttgttg
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