1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttctaactaagttattatcctgtcaatcactctttttttggagcaaaggttgttgggagtgcctgagtgtccactaatggaaggattgttttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATATATTGAGGAAGCAAACTGCCTTGAAG
species | Zea mays |
transcript | GRMZM2G061980_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCGTTCTCGCTGCTTCAACTCGTCGTCTTCATACGGCAGCATCTTCAAG GTTTCTTTGTCCCAATTTGGATTGCTGCGGTAAATGTTCAAGTCGAAACAAEST: gi|148987132|gb|EE030960.2|EE030960
genomic: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAGgtttgcttca ... ttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAA-TGTTCAAGTCGAA-CGA
EST: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAG GTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATAEST: gi|149078658|gb|EE167447.2|EE167447
genomic: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAGgtttgcttca ... ttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATA
EST: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAG GTTTCTTTGTCACAATTTGGATTGCTGEST: gi|31360183|gb|CD444540.1|CD444540
genomic: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAGgtttgcttca ... ttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTG
EST: CCGTTCTCGCTGGTGGGTACTCGTCGTCTTCATACGGCAGCATCTTCAAG GTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATAEST: gi|71324220|gb|DR798811.1|DR798811
genomic: CCGTTCTCGCTGCT-TCTACTCGTCGTCTTCATACGGCAGCATCTTCAAGgtttgcttca ... ttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATA
EST: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAG GTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATA
genomic: GCCGTTCTCGCTGCTTCTACTCGTCGTCTTCATACGGCAGCATCTTCAAGgtttgcttca ... ttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATA
aaggttgttgggagtgcctgagtgtccactaatggaaggattgttttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATATATTGAGGAAGCAAACTGCCTTGAAG
cactaat putative branch site (score: 2)
ttgtttt putative PPT
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctaactaagttattatcctgtcaatcactctttttttggagcaaaggttgttgggagtgcctgagtgtccactaatggaaggattgttttgtgtgcagGTTTCTTTGTCACAATTTGGATTGCTGCGGTAATGTTCAAGTCGAACGATATATTGAGGAAGCAAACTGCCTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - tggagca
- - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga