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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgtgttacatctgtggtctaggaaaattgctgttttatgtttctcagtgaagaaaaataccgatactaataatgtaggtcttgtgcgggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCC

Basic information

species Zea mays
transcript GRMZM2G061928_T04
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211146691|gb|FK994973.1|FK994973
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGAKAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145266|gb|FK994966.1|FK994966
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|31909409|gb|CD650904.1|CD650904
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAG-GAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146700|gb|FK994982.1|FK994982
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTAGAGCAGCCGAAGA
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCT-GAGCAGCCGAAGA
EST: gi|211148123|gb|FK994991.1|FK994991
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149572|gb|FK995003.1|FK995003
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143831|gb|FK994953.1|FK994953
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGGGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146694|gb|FK994976.1|FK994976
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149573|gb|FK995004.1|FK995004
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146702|gb|FK994984.1|FK994984
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146692|gb|FK994974.1|FK994974
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACGGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148133|gb|FK995001.1|FK995001
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGSTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145267|gb|FK994967.1|FK994967
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145261|gb|FK994961.1|FK994961
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATRGGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146703|gb|FK994985.1|FK994985
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149571|gb|FK995002.1|FK995002
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211159905|gb|FK953709.1|FK953709
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149575|gb|FK995006.1|FK995006
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145265|gb|FK994965.1|FK994965
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145262|gb|FK994962.1|FK994962
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146693|gb|FK994975.1|FK994975
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148126|gb|FK994994.1|FK994994
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145258|gb|FK994958.1|FK994958
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|13178120|gb|BG349378.1|BG349378
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|28930839|gb|CB334200.1|CB334200
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145260|gb|FK994960.1|FK994960
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146695|gb|FK994977.1|FK994977
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145263|gb|FK994963.1|FK994963
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146701|gb|FK994983.1|FK994983
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|74237956|gb|DT645870.1|DT645870
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149576|gb|FK995007.1|FK995007
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146698|gb|FK994980.1|FK994980
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145259|gb|FK994959.1|FK994959
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143833|gb|FK994955.1|FK994955
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143834|gb|FK994956.1|FK994956
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143830|gb|FK994952.1|FK994952
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148120|gb|FK994988.1|FK994988
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148131|gb|FK994999.1|FK994999
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGARACTCCGACAGTCCGASCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCRGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149574|gb|FK995005.1|FK995005
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145269|gb|FK994969.1|FK994969
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148121|gb|FK994989.1|FK994989
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143828|gb|FK994950.1|FK994950
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146699|gb|FK994981.1|FK994981
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|28873717|gb|CB329666.1|CB329666
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148129|gb|FK994997.1|FK994997
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148119|gb|FK994987.1|FK994987
EST:     GCCTCCGCTGCSGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGSTTCTGCTGAGCAGCSGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145264|gb|FK994964.1|FK994964
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148122|gb|FK994990.1|FK994990
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148127|gb|FK994995.1|FK994995
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146697|gb|FK994979.1|FK994979
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148128|gb|FK994996.1|FK994996
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAKTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145270|gb|FK994970.1|FK994970
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211143829|gb|FK994951.1|FK994951
EST:     GCCTCCGCTGCCGGTCG-CGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211146690|gb|FK994972.1|FK994972
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149578|gb|FK995009.1|FK995009
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211145271|gb|FK994971.1|FK994971
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211149577|gb|FK995008.1|FK995008
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTRCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|211148130|gb|FK994998.1|FK994998
EST:     GCSTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG
EST: gi|31358333|gb|CD442690.1|CD442690
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         AAGGATGAGTGAAGAGGATAAGACTGGTGCTTCTGCTGAGCAGCCGAAGAG
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... ggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcagtgaagaaaaataccgatactaataatgtaggtcttgtgcgggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCC
                     tactaat  putative branch site (score: 1)
                    atactaataatgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttgtgttacatctgtggtctaggaaaattgctgttttatgtttctcagtgaagaaaaataccgatactaataatgtaggtcttgtgcgggatccacagAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCTCTTCTCTGTCCAGGAGGTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA