1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctactgaattgttagagaattatatagatatgttatgttaccgcctttttttttacctgatgtgttcttttatctcgacaaccctggattaaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCCATGAACCCTTCGTCGTCATCCACCTCCTCCTCTGGCGGGTACCACTCTA
species | Zea mays |
transcript | GRMZM2G061783_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTG CTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCCEST: gi|148954498|gb|EC899929.2|EC899929
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGgcatgtaccg ... aaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCC
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGG CEST: gi|148954498|gb|EC899929.2|EC899929
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCT-Ggcatgtaccg ... aaaatcctag-
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGG CEST: gi|148954498|gb|EC899929.2|EC899929
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCT-Ggcatgtaccg ... aaaatcctag-
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGG CEST: gi|148954498|gb|EC899929.2|EC899929
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCT-Ggcatgtaccg ... aaaatcctag-
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGG CEST: gi|89251355|gb|DY623141.1|DY623141
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCT-Ggcatgtaccg ... aaaatcctag-
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTG CTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCCEST: gi|74234857|gb|DT642771.1|DT642771
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGgcatgtaccg ... aaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCC
EST: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTG CTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCC
genomic: ACCACGGAGTTCGTGCGCTGGCTGGTTGTCTGCGGAAGACTCTCCCTCTGgcatgtaccg ... aaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCC
tttttttttacctgatgtgttcttttatctcgacaaccctggattaaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCCATGAACCCTTCGTCGTCATCCACCTCCTCCTCTGGCGGGTACCACTCTA
acctgat putative branch site (score: 5)
attaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactgaattgttagagaattatatagatatgttatgttaccgcctttttttttacctgatgtgttcttttatctcgacaaccctggattaaaatcctagCTCCGCCACTGCCGCCACCTCCCTGCTCCAACCCCGCACCTCCGCTTCGCCATGAACCCTTCGTCGTCATCCACCTCCTCCTCTGGCGGGTACCACTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
ctactga
- - - - - - - - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgga