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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG

Basic information

species Zea mays
transcript GRMZM2G061745_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 1
cagttagatctattgacgtggaatgc-ccgtgcggaattgattagatctgtgacgt--tgtcccgggggtgacttgctaaatccgctacttgattt----------tttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
             || |||| | |||   |  |       ||||||||||||  ||  | | || | |  || || ||  ||      | || | |          ||||||||||||||||| ||||||||||||||||| |||||||||||||| || || ||||||||||| || ||||| ||||||||||||||||| || |
-------------tggcgtgaattgcgttgaacctgcacaattagatctgtggagttctattccagtgacgatttactgtatttatagcatgctatggcacttggttttgcagTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA11G34980.1 (Glycine max), 3'ss of exon 1
cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttg-ctaaatc-cgctacttgattttttg-----cagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
   | |  | | ||||  ||      |  || | |||| |  | || |   || |  |   | | |||| ||| ||   || | ||||||| || | |      ||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||||| || || ||||| |||||||| || || || ||||
---tgaattttgttgaaatga---ttctatgtgcaatttagaaaat-taacacctattggggtgtgtgaattgtctgtctctcactacttggttatctaattgacagTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA18G03360.1 (Glycine max), 3'ss of exon 1
----cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
     || | | |   |  |    ||||    | |  |  |  ||  |   | ||||  ||    |   ||  ||  |||  |  | ||  | ||||    ||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||||||||| || || ||||| |||||||| || || || ||| 
gcataagattgttacttccaaaatgaatttttgagatgtttcaatgtgcaatttgacagtgaattgtctgtctctcactac-ttggttatctaatttg--acaGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCGATGTTTTCCATGTTTAAAAGAATAAAT-

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 3'ss of exon 1
cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgc-taaatccgct-acttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
  | | | | |||  | |   | || |  |    |  |  |||       || |||||          | | |  | ||   | | || |  |   ||| |||||| ||||||||||||||||| || || || |||||||| ||||| ||||| ||||| ||||||||||||  |||||||||||| |||||||
-tgcttgct-tatctatggacactgtcactagaaacctctttaatagatggatgttgtttacatatgaattcgtgttaacatgttgacatcttgaattgtagTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT3G11270.2 (Arabidopsis thaliana), 3'ss of exon 1
cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgt--cccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
   || ||| |      ||  | | | | || |    || | | |  || |  |||||  |  |    | ||||| |  |     |  |||   |||| ||||||| ||||||||||||||||| ||  | || || ||||| ||||| ||||| ||||||||||| |||||   |||||||||||| |||||||
-catttgattttgcacagtacattacac-tgtgagcatgttcataagtgcgttgttgttacttgcacatcacttgtttgactttttgtttgtggttttacagTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 1
-----cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
      | |  | | |||     ||| ||      | ||     |  | |  ||| |     | |    ||    |||||||||     | |    | ||||||||||| ||||| || ||||||||||| || || || || || ||||||||||| |||||||| |||||||| |||||||||||||| || ||||
aaacagattagggtttataatactggcattgttaagaggggacaaaaaaaattgtca----attcttatggct-tttgctaaatggtagagtgctgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGTATATGTTTTCTTGACCACAACTACCACGAATCAATGTTTTCCATGTTCAAGAGAATAAATG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
-cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgact--tgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
 ||    ||    ||   ||  |  |     ||    || |   | |    ||  ||| ||      || ||  ||||||||       |    | ||||||||||| ||||| || ||||||||||| || || || ||||| ||||||||||| || || || |||||||| |||||||||||||| || ||||
ccaagcggagg-gttagggtttatagtattggcattgttaagagggtacaaga-attg-ccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG

upper sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 3'ss of exon 1
---cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
   |  | | ||     ||      |   || |  ||   |    |  ||| |   |               |  | |      |  | | ||||||||  |||||| |||||||| |||||||||||| | || || |||||| | |||||||| || || ||| | ||||||  |||||||||||| ||||| |
ggactataaaattggaagaaaaaataataccatagggcgatatgaaattctattttgggactgaaaaacgatcgcgatggggatgggagt-gatttttt--agTGCCCTTTGAGGAAGATGACAAGGATGCCAGCATATGGTTCTTGGACCACAACTATCATGAGACTATGTTCGACATGTTCAAGAGAATTAACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211110416|gb|FL202645.1|FL202645
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|91048122|gb|EB158540.1|EB158540
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113175|gb|FL202691.1|FL202691
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222278|gb|FL202724.1|FL202724
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|60348273|gb|DN215246.1|DN215246
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|20811186|gb|BQ295664.1|BQ295664
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCTTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113174|gb|FL202690.1|FL202690
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222275|gb|FL202721.1|FL202721
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222279|gb|FL202725.1|FL202725
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220205|gb|FL202707.1|FL202707
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110418|gb|FL202647.1|FL202647
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACN
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220211|gb|FL202713.1|FL202713
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112251|gb|FL202672.1|FL202672
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220206|gb|FL202708.1|FL202708
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATATCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|149014660|gb|EE044326.2|EE044326
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|61119047|gb|DN560008.1|DN560008
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|148958380|gb|EC904610.2|EC904610
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222271|gb|FL202717.1|FL202717
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222280|gb|FL202726.1|FL202726
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112249|gb|FL202670.1|FL202670
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110420|gb|FL202649.1|FL202649
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110421|gb|FL202650.1|FL202650
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110417|gb|FL202646.1|FL202646
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113176|gb|FL202692.1|FL202692
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113170|gb|FL202686.1|FL202686
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|31664405|gb|CD573130.1|CD573130
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|148960678|gb|EE011309.2|EE011309
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|149013823|gb|EE043297.2|EE043297
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|78081117|gb|DV509529.1|DV509529
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113182|gb|FL202698.1|FL202698
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|50325946|gb|CO521072.1|CO521072
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111338|gb|FL202663.1|FL202663
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220203|gb|FL202705.1|FL202705
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|76015327|gb|DT942497.1|DT942497
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110422|gb|FL202651.1|FL202651
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAKGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220204|gb|FL202706.1|FL202706
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211224334|gb|FL202735.1|FL202735
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|149081616|gb|EE170759.2|EE170759
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|22818902|gb|BU498992.1|BU498992
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113178|gb|FL202694.1|FL202694
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATC
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATC
EST: gi|101396014|gb|EB819936.1|EB819936
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113172|gb|FL202688.1|FL202688
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112252|gb|FL202673.1|FL202673
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222270|gb|FL202716.1|FL202716
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220207|gb|FL202709.1|FL202709
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|44681759|gb|CK786807.1|CK786807
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111337|gb|FL202662.1|FL202662
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|91055801|gb|EB166219.1|EB166219
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|78081122|gb|DV509534.1|DV509534
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|6095435|gb|AW120102.1|AW120102
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|26456947|gb|CA828530.1|CA828530
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113179|gb|FL202695.1|FL202695
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCACGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCAC
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGC-CGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCAC
EST: gi|211112250|gb|FL202671.1|FL202671
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGRCAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222282|gb|FL202728.1|FL202728
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|148943844|gb|EC888923.2|EC888923
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112254|gb|FL202675.1|FL202675
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211224333|gb|FL202734.1|FL202734
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222281|gb|FL202727.1|FL202727
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|148935087|gb|EC879128.2|EC879128
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|108953226|gb|EC364647.1|EC364647
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTACCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220199|gb|FL202701.1|FL202701
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110414|gb|FL202643.1|FL202643
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111334|gb|FL202659.1|FL202659
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222276|gb|FL202722.1|FL202722
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111335|gb|FL202660.1|FL202660
EST:     CTCGGCACCTCATCCCGCGGGTCCGTCGATAGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CTCGGCACCTCATCCCGCGGGTCCGTCGAT-GTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111333|gb|FL202658.1|FL202658
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|148971131|gb|EE021979.2|EE021979
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220200|gb|FL202702.1|FL202702
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222269|gb|FL202715.1|FL202715
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111330|gb|FL202655.1|FL202655
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|60350695|gb|DN217668.1|DN217668
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111344|gb|FL202669.1|FL202669
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211113173|gb|FL202689.1|FL202689
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111343|gb|FL202668.1|FL202668
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|89756277|gb|DY686359.1|DY686359
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110424|gb|FL202653.1|FL202653
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCT-TTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222272|gb|FL202718.1|FL202718
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112256|gb|FL202677.1|FL202677
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|62525906|gb|DN828554.1|DN828554
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211111339|gb|FL202664.1|FL202664
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211222283|gb|FL202729.1|FL202729
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCC
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCC
EST: gi|211112259|gb|FL202680.1|FL202680
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|149072304|gb|EE160567.2|EE160567
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112258|gb|FL202679.1|FL202679
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|149107089|gb|EE188981.2|EE188981
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211110425|gb|FL202654.1|FL202654
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211112260|gb|FL202681.1|FL202681
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211224329|gb|FL202730.1|FL202730
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
EST: gi|211220198|gb|FL202700.1|FL202700
EST:     CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCG                         TGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA
genomic: CCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 300

CACTACAACCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 168

CACTACAACCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 174

CACTACAACCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 189

CACTACAACCGCGTCGCCCGCGACACCCGCAAGCGCGTCGTCGGCGTCCTCCTCGGCACCTCATCCCGCGGGTCCGTCGATGTCACCAACTCCTACGCCGgtaaacctct ... ttttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG
                                             ttttttgc  CT-rich tract
                                         ttgatttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgacttgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT