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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtattgagtggtgccctagtcatgacacttgattgtatagccaaaccatgatcatatttttcagttcaacaatttgctaatttctttcttgtgtttaagGAAATGGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGC

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 3'ss of exon 1
tgtattgagtggtgccctagtcatgacacttgattgtatagccaaaccatgatcatatttttcagttcaac---aatttgctaatttctttcttgtgtttaagGAAATGGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGC
    | || |     | |   ||  |       | |  |    ||| |||||  || | |||||| |  ||    |||||||  ||| ||  || ||||| |||||||||| ||||| ||| ||||||| ||  ||||||||||  |||||||  |||| ||||||||||||||||| ||||||||||||||||||||||| |
--cttagaatacattcatttacaaaaagtgccgtgggttctataaagcatgacgatgtgtttcagctgtactgagatttgcttgtttattg-ttatgtttcagGAAATGGGGCTACTGGAGGTTAAACACGGGTTGCTACAAGTCTCAGAGACACTAGACTTTCTTCATAACAATGCCCATCTTGCCCATCGAGCTATATCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accatgatcatatttttcagttcaacaatttgctaatttctttcttgtgtttaagGAAATGGGACTACTTGAGATTAAACATGGACTGCTACAAGTTGCAGAGACGTTAGATTTTCTTCATAACAATGCTCATCTTGCCCATCGAGCTATATCGC
                              tgctaat  putative branch site (score: 2)
                                    tttctttcttgtgttt  CT-rich tract
      atcatattttt  TA-rich tract