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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctatctccctgtaatgtaatttcgtagctgcttccgccattaatccattcaaattcctaccgcgtgctgcctaactgaccactgattcctcgctgacagAGGCCTGGCGCACCTCCGGCCAGGAGGGTCACCATGCGGGAGCACATGTCCTCGTCCCCTCTGAGTTCACCGCCGCACCATGTCATGCCGTTCGTTGATG

Basic information

species Zea mays
transcript GRMZM2G061663_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211502002|gb|FL279580.1|FL279580
EST:     ATACGGTGGCCGCGCGCCGCCGCGCCGAGGCCGACAGGCCGCGGAGAGAG                         AGGCCTGGCGCACCTCCGGCCAGGAGGGTCACCATGCGGGAGCACATGTCC
genomic: ATACGGTGGCCGCGCGCCGCCGCGCCGAGGCCGACAGGCCGCGGAGAGAGgtacgcctta ... tcgctgacagAGGCCTGGCGCACCTCCGGCCAGGAGGGTCACCATGCGGGAGCACATGTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattcaaattcctaccgcgtgctgcctaactgaccactgattcctcgctgacagAGGCCTGGCGCACCTCCGGCCAGGAGGGTCACCATGCGGGAGCACATGTCCTCGTCCCCTCTGAGTTCACCGCCGCACCATGTCATGCCGTTCGTTGATG
                                         ttcctcgct  CT-rich tract
      aaatt  TA-rich tract