Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatattcaaattccactttgcaaacagtgcagtctatttaacaagaatttggtaataatgttgttgcatgcccgctattgacacaagttcttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTATCCTGCTGACCAACAAGTGCTTATACACCAGGGGAAGGTGCTCAAGGACG

Basic information

species Zea mays
transcript GRMZM2G061620_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211500818|gb|FL228127.1|FL228127
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|76012358|gb|DT939528.1|DT939528
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|5296098|gb|AI782973.1|AI782973
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|211500819|gb|FL228128.1|FL228128
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|4314922|gb|AI444722.2|AI444722
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|211500823|gb|FL228132.1|FL228132
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|211500820|gb|FL228129.1|FL228129
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|101401583|gb|EB822467.1|EB822467
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|32915276|gb|CF020088.1|CF020088
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACTATTATTTGGCTTCCTA
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATAC-AAGAGCAGGCTTCCTA
EST: gi|76280698|gb|DV020266.1|DV020266
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|4681058|gb|AI629728.1|AI629728
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
EST: gi|211500822|gb|FL228131.1|FL228131
EST:     AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAG                         GTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT
genomic: AGACGCTCAAGGGATCCAGCTTCCATATCGAAGTGGATCCTACCGACAAGgtaggcagcc ... cttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttggtaataatgttgttgcatgcccgctattgacacaagttcttcaaacagGTTGCCGACGTGAAAAAGGTTATAGAGAGTATACAAGAGCAGGCTTCCTATCCTGCTGACCAACAAGTGCTTATACACCAGGGGAAGGTGCTCAAGGACG
                               tattgac  putative branch site (score: 2)
                                           ttcttc  putative PPT
        taataatgtt  TA-rich tract