Sequence
atgc intronic sequence ATGC exonic sequence...gctgtcgctggtgaccgggctgtggcccagggagcagaggctgctgtaccggggcaaggagagggacgaccgcgagcacctgcacatggtgggcgtccagGACAGGGACAAGGTGCTGCTCCTGGAGGACCCGGCCGTCAAGGAGAGGAAGCTCAGGTCAACCACCTTGGCGCAGCTCATGGGCGTGCCCTGCCACTCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G061396_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g67950.1 (Oryza sativa), 3'ss of exon 1
-gctgtcgctggtgaccgggctgtggc--ccagggagcagaggctgctgtaccggggcaaggagagggacgaccgcgagcacctgcacatggtgggcgtccagGACAGGGACAAGGTGCTGCTCCTGGAGGACCCGGCCGTCAAGGAGAGGAAGCTCAGGTCAACCACCTTGGCGCAGCTCATGGGCGTGCCCTGCCACTCCT-
||| | | | || | ||| | || ||| | ||||| | || || ||| |||| | | | || | | | ||||| |||| | ||| ||| || | |||| | | ||| | || | || | | || | |||
gtgcgtcccacattgcattgcctcgattgccattctcctcagctgatcatactaga--aaggaaataaactga-gctgttctttgc-catgatcgatgcagGTGATCTGAAGGTGATGCTGTCGCTGGTG-ACCGGGCTGT--GGCCGAGGGACCAGAGGCTGCTGTACAAGGGGAAGGAGAGAGACGACGGCGATCACCTGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211473460|gb|FL247712.1|FL247712EST: NGGATGGTGAAGATTCCGAGCCCCAGCAGGCTGTTCAGGAGCCGGTCCAG GACAGGGACAAGGTGCTGCTCCTGGAGGACCCGGCCGTCAAGGAGAGGAAG
genomic: GGGATGGTGAAGATTCCGAGCCCCAGCAGGCTGTTCAGGAGCCGGTCCAGgagcagcacc ... gggcgtccagGACAGGGACAAGGTGCTGCTCCTGGAGGACCCGGCCGTCAAGGAGAGGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctgtcgctggtgaccgggctgtggcccagggagcagaggctgctgtaccggggcaaggagagggacgaccgcgagcacctgcacatggtgggcgtccagGACAGGGACAAGGTGCTGCTCCTGGAGGACCCGGCCGTCAAGGAGAGGAAGCTCAGGTCAACCACCTTGGCGCAGCTCATGGGCGTGCCCTGCCACTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - gctggtg
- - - - - - - - - -ctgtggc
- - - - - - - - - - - - - - - ggagcag
- - - - - - - - - - - - - - - - - - - -gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgg