1 5' 3' | 2 5' 3' | 3 5' 3' |
gtataacgacaacactatatgtatatactactaatttctgaattttctgattaattgtgtgtgtctggctgaaacaatggatctacatgcatgttttgtgtgcgtgtgtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCAATCCAGGAAGCGGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACT
species | Zea mays |
transcript | GRMZM2G061101_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATG GAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCAEST: gi|67018716|gb|CO447465.1|CO447465
genomic: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATGgtataacgac ... gtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCA
EST: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATG GAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCAEST: gi|67029301|gb|CO458050.1|CO458050
genomic: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATGgtataacgac ... gtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCA
EST: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATG GAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCA
genomic: ACGGCAGACAAGAAGAACAACCAGCAGACCCAGAGCTCGATCAGTTCATGgtataacgac ... gtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCA
gtctggctgaaacaatggatctacatgcatgttttgtgtgcgtgtgtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCAATCCAGGAAGCGGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACT
aaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataacgacaacactatatgtatatactactaatttctgaattttctgattaattgtgtgtgtctggctgaaacaatggatctacatgcatgttttgtgtgcgtgtgtgtgtgcagGAGATCTACTGTCACATGTTGGTAAGGTACAGACAGGAGCTCACAAGGCCAATCCAGGAAGCGGACGAATTCTTCAAAAGCATGGAGGCCCAGATCGACT
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