1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggttcccgttcccatgtcagagggccacgtttcccatgctcctcggtttgtgcctgcaatcgcttgctgcttagcctccgtgctgctgctttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGGAAGTGGTTTGAATGGGGCGGTGCAGGCAAAGGGGACTGGGGCTGATGAT
species | Zea mays |
transcript | GRMZM2G060896_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCCGTGCCACCTG AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGGEST: gi|71305271|gb|DR788769.1|DR788769
genomic: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
EST: GTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTG AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGGEST: gi|23199597|gb|BU582162.1|BU582162
genomic: GTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
EST: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCCGTGCCACCTG AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
genomic: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
ggtttgtgcctgcaatcgcttgctgcttagcctccgtgctgctgctttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGGAAGTGGTTTGAATGGGGCGGTGCAGGCAAAGGGGACTGGGGCTGATGAT
ctttgat putative branch site (score: 5)
ctgcttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttcccgttcccatgtcagagggccacgtttcccatgctcctcggtttgtgcctgcaatcgcttgctgcttagcctccgtgctgctgctttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGGAAGTGGTTTGAATGGGGCGGTGCAGGCAAAGGGGACTGGGGCTGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT