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gtattttcacccaccctttgctttatgattatccgttttgaatgtgctgcactgctgctacctttccgttgccggagtatcgaatgccgacgcttagacgatcagtagcgcttatgtatattttttggttggtatggtatcgattatttaacctgctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCAACTGCACGGCGATTTCGTCACCAAGGTCTCTGACATGGTCTGGAGGAG
species | Zea mays |
transcript | GRMZM2G060842_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211050404|gb|FL363822.1|FL363822
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|76280845|gb|DV020413.1|DV020413
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|37417224|gb|CF646264.1|CF646264
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|50327397|gb|CO522523.1|CO522523
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211271929|gb|FL194754.1|FL194754
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|91875732|gb|EB405689.1|EB405689
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211290817|gb|FL312641.1|FL312641
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211305896|gb|FL324269.1|FL324269
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|76912690|gb|DV164849.1|DV164849
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|101386086|gb|EB815086.1|EB815086
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|50323043|gb|CO518169.1|CO518169
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: TACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211386003|gb|FL329687.1|FL329687
genomic: TACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|50326968|gb|CO522094.1|CO522094
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCEST: gi|211265830|gb|FL364906.1|FL364906
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
EST: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAG CTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
genomic: GCCCCTGGAGCGAACCTCGGCTCTCCGCTACTCCTCCCTCCAAGCTCAAGgtattttcac ... ctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGC
cttatgtatattttttggttggtatggtatcgattatttaacctgctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCAACTGCACGGCGATTTCGTCACCAAGGTCTCTGACATGGTCTGGAGGAG
atttaac putative branch site (score: 3)
tatattttttggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttcacccaccctttgctttatgattatccgttttgaatgtgctgcactgctgctacctttccgttgccggagtatcgaatgccgacgcttagacgatcagtagcgcttatgtatattttttggttggtatggtatcgattatttaacctgctgctaacagCTGGGGACAGTATTGGGGAGGAGGCCCTGCGCATGTTCCTTGAGGACAGGCAACTGCACGGCGATTTCGTCACCAAGGTCTCTGACATGGTCTGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG