1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgctctgtggttctccgtcgtcgattgccattttaacacctagtagttgttgttgacgatatgcttctctgtgcttccggttctgcatgatccaggcagCAGCCAGGAACAACAAGCTAGGCCCCCTCACGCAGACCGCACGACCGAGCGCGCGGCATTGACCGACCCATCGCCGCCGCCGCCGCCTCGATCGACCATG
species | Zea mays |
transcript | GRMZM2G060742_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT TEST: gi|148934122|gb|EC878137.2|EC878137
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT TEST: gi|148934122|gb|EC878137.2|EC878137
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT TEST: gi|211317617|gb|FL072363.1|FL072363
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT CAGCCAGGAACAACAAGCTAGGCCCCCTCACGCAGACCGCACGACCGAGCGEST: gi|211319641|gb|FL072373.1|FL072373
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcagCAGCCAGGAACAACAAGCTAGGCCCCCTCACGCAGACCGCACGACCGAGCG
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319641|gb|FL072373.1|FL072373
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319641|gb|FL072373.1|FL072373
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319641|gb|FL072373.1|FL072373
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319641|gb|FL072373.1|FL072373
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149111495|gb|EE294998.2|EE294998
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149111495|gb|EE294998.2|EE294998
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211317619|gb|FL072365.1|FL072365
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211317619|gb|FL072365.1|FL072365
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148965701|gb|EE016564.2|EE016564
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148965701|gb|EE016564.2|EE016564
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148990641|gb|EE032032.2|EE032032
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148990641|gb|EE032032.2|EE032032
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|71773770|gb|DR971665.1|DR971665
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|71773770|gb|DR971665.1|DR971665
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149065590|gb|EE286713.2|EE286713
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149065590|gb|EE286713.2|EE286713
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319640|gb|FL072372.1|FL072372
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319640|gb|FL072372.1|FL072372
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319638|gb|FL072370.1|FL072370
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|211319638|gb|FL072370.1|FL072370
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149108439|gb|EE292776.2|EE292776
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149108439|gb|EE292776.2|EE292776
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149108439|gb|EE292776.2|EE292776
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149108439|gb|EE292776.2|EE292776
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149108439|gb|EE292776.2|EE292776
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148931780|gb|EC875059.2|EC875059
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|148931780|gb|EC875059.2|EC875059
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149014994|gb|EE044736.2|EE044736
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT GEST: gi|149014994|gb|EE044736.2|EE044736
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
EST: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAAT G
genomic: GCAGCTGCTAGCTCATCTGCTTGATCTCTAGCTGAGACTCCGAGCAAAATgtaagttttc ... atccaggcag-
agttgttgttgacgatatgcttctctgtgcttccggttctgcatgatccaggcagCAGCCAGGAACAACAAGCTAGGCCCCCTCACGCAGACCGCACGACCGAGCGCGCGGCATTGACCGACCCATCGCCGCCGCCGCCGCCTCGATCGACCATG
tgttgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctctgtggttctccgtcgtcgattgccattttaacacctagtagttgttgttgacgatatgcttctctgtgcttccggttctgcatgatccaggcagCAGCCAGGAACAACAAGCTAGGCCCCCTCACGCAGACCGCACGACCGAGCGCGCGGCATTGACCGACCCATCGCCGCCGCCGCCGCCTCGATCGACCATG
-tgctctg
- - - - tggttct
- - - - - - - - - - - - - tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttctgc