Sequence
atgc intronic sequence ATGC exonic sequence...ttcaaatgttgaattatttgattaggaactatattatcacgtcttttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G060727_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g55010.1 (Oryza sativa), 3'ss of exon 4
--------------------------------ttcaaatgttgaattatttgattaggaactatattatcacgtcttttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
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accatgtgtggttccacatatatttcttttctctgaactatagaattttttgacctggaattgtattatcatgttgtttgactagtttatgttgttgcagATTTTAAATTTGACTGAGCTGGAACTCCACAGGGTTGATATCAGAGTTGGTCTCTCTGGAGCACTGTATTATATGGATGGATTCTCCCGCACAGTTCGGC-----------------------
upper sequence: GRMZM2G060727_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g07470.1 (Oryza sativa), 3'ss of exon 4
------------------------------ttcaaatgttgaattatttgattaggaact--atattatcacgtcttttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
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ttggtttgaagttaaaataactgcatatattgcttgctctaagatctgttattgcttgtttattattaccatgttttttgactagtttgtgttgttgcagATCTTGAATTTGACTGAGCCGGAGCTCAACAGGGTTGATATCCGAGTTGGACTCTCTGGAGCACTGTATTACATGGATGGATTTTCCCGCACCGTTCGAC-----------------------
upper sequence: GRMZM2G060727_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0171g00280.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------ttcaaatgttgaatt---atttgattaggaactatattatcacgtctt-ttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
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ataataatttaatggtgcttggtatgatgaatagttctctgatttgtgttggaatagaattcagaacttcttgtcatgctaactgata-gacctattgcagGTTTTAAATTTGACTGAACTTGAACTTAATCGGGTGGATATTCGGGTTGGTCTCTCTGGTGCGTTATATTTTATGGATGGGTCTCCTCAAGCAGTACGGC-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76912182|gb|DV164603.1|DV164603EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAG GGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTT
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctg ... aactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
tttcagattttaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaaatgttgaattatttgattaggaactatattatcacgtcttttgactagtgtgtcctgtttcagattttaaatttgactgagctagaactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTTCTCTCGGACTGTTCGCCACCTCGGAAATCTTGTTTCCCAG
- - - tgttgaa