1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtatgctgtagctgtacaagcctacaaagctgcaaggctcgtgtaagctatgcataggcttgcaagtgatgttggattttggaatgctatcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAGCCCGATGGTTTGTCAGGTAAGTACACAGAAGCAATCAAGGAGGTCATC
species | Zea mays |
transcript | GRMZM2G060464_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375642|gb|FL110760.1|FL110760
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211477829|gb|FL110766.1|FL110766
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|50330122|gb|CO525248.1|CO525248
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211477830|gb|FL110767.1|FL110767
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211477826|gb|FL110763.1|FL110763
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375638|gb|FL110756.1|FL110756
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: CCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211477831|gb|FL110768.1|FL110768
genomic: CCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211477827|gb|FL110764.1|FL110764
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375643|gb|FL110761.1|FL110761
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375634|gb|FL110752.1|FL110752
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375639|gb|FL110757.1|FL110757
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|37424406|gb|CF649935.1|CF649935
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|211375635|gb|FL110753.1|FL110753
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTG-CTKCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAEST: gi|60351869|gb|DN218842.1|DN218842
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
EST: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCG GTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
genomic: GGCGCCCTCGTCAGGCTCTGCCTGCCTTCGCTCCTCCTCTTTCTGTACCGgtaagaggtg ... atcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAA
taagctatgcataggcttgcaagtgatgttggattttggaatgctatcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAGCCCGATGGTTTGTCAGGTAAGTACACAGAAGCAATCAAGGAGGTCATC
tatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatgctgtagctgtacaagcctacaaagctgcaaggctcgtgtaagctatgcataggcttgcaagtgatgttggattttggaatgctatcaattcagGTGCTGCAGATGTGAGGCTGTTGAGATGGAGAGAACCCTTGCGATGATCAAGCCCGATGGTTTGTCAGGTAAGTACACAGAAGCAATCAAGGAGGTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG