1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attcacatgtaatatttttgggaagttttccttgtattgagattgccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
species | Zea mays |
transcript | GRMZM2G059991_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|149058839|gb|EE156860.2|EE156860
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60395736|gb|DN228606.1|DN228606
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|71429171|gb|DR810221.1|DR810221
genomic: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|21389905|gb|BQ527954.1|BQ527954
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|211507633|gb|FL212146.1|FL212146
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|22935765|gb|BU572040.1|BU572040
genomic: CAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|76933824|gb|DV173600.1|DV173600
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60400370|gb|DN233177.1|DN233177
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|149085021|gb|EE174530.2|EE174530
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|29576842|gb|CB616954.1|CB616954
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: GCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60394126|gb|DN226996.1|DN226996
genomic: GCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|31358052|gb|CD442409.1|CD442409
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60346223|gb|DN213196.1|DN213196
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60399935|gb|DN232742.1|DN232742
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|76013538|gb|DT940708.1|DT940708
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|78076311|gb|DV504745.1|DV504745
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|211509987|gb|FL212152.1|FL212152
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|16925475|gb|BM078543.1|BM078543
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: TTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60401116|gb|DN233923.1|DN233923
genomic: TTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|76933825|gb|DV173601.1|DV173601
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|22542675|gb|BU093113.1|BU093113
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60400384|gb|DN233191.1|DN233191
genomic: CCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|22818940|gb|BU499030.1|BU499030
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|149085100|gb|EE174607.2|EE174607
genomic: CTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|91871701|gb|EB401658.1|EB401658
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|78087633|gb|DV516026.1|DV516026
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60399390|gb|DN232204.1|DN232204
genomic: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCTTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|31357365|gb|CD441722.1|CD441722
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCANCGGCGGCG GTCATGTGACCCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|8665682|gb|BE186498.1|BE186498
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60357925|gb|DN224898.1|DN224898
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|78026618|gb|DV495005.1|DV495005
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: GCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|67020859|gb|CO449608.1|CO449608
genomic: GCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|76013539|gb|DT940709.1|DT940709
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGCEST: gi|60343978|gb|DN210951.1|DN210951
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
ccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
tgctaac putative branch site (score: 138)
tcatttttc putative PPT
taacataattatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcacatgtaatatttttgggaagttttccttgtattgagattgccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -catgtaa
- - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctaa