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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attcacatgtaatatttttgggaagttttccttgtattgagattgccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC

Basic information

species Zea mays
transcript GRMZM2G059991_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059991_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G10920.1 (Arabidopsis thaliana), 3'ss of exon 1
-attcacatgtaatatttttgggaagttttccttgtattgagattgccaactaactgt-tcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
||| | | | | || | || ||| | | |||| | | ||| | || | | | || || | ||| | | |||||||||| |||||||| || |||||||||||||| || ||
gattgatagaagagaaattggcagagaaactattggaaataaattg--agttttttgtgtgctagagaatgggaattgatcgactttatttctaacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT

upper sequence: GRMZM2G059991_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv13s0067g02990.t01 (Vitis vinifera), 3'ss of exon 1
attcacatgtaatatttttgggaagttttccttgtattgag-attgccaactaactgttcctctgctctagaagtttgct------aacataatt--atcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
| | ||||| ||| |||| ||| || | || | | | || | | |||||| || || | | || | |||||||||||| ||||| ||||| ||||||||||| |||| || ||
--------cttcttttttttcttccccttctttgttatgaatatcagtggttttct-ctgttattatccatgattttgctttatataaaatgacttgattttcattcagGTCATGTCAACCACTCAATTTTCTGGAAGAATCTCACCCCTGTTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342800|gb|DN209773.1|DN209773
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|149058839|gb|EE156860.2|EE156860
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60395736|gb|DN228606.1|DN228606
EST:     TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|71429171|gb|DR810221.1|DR810221
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|21389905|gb|BQ527954.1|BQ527954
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|211507633|gb|FL212146.1|FL212146
EST:     CAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|22935765|gb|BU572040.1|BU572040
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|76933824|gb|DV173600.1|DV173600
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60400370|gb|DN233177.1|DN233177
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|149085021|gb|EE174530.2|EE174530
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|29576842|gb|CB616954.1|CB616954
EST:     GCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: GCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60394126|gb|DN226996.1|DN226996
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|31358052|gb|CD442409.1|CD442409
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60346223|gb|DN213196.1|DN213196
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60399935|gb|DN232742.1|DN232742
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|76013538|gb|DT940708.1|DT940708
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|78076311|gb|DV504745.1|DV504745
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|211509987|gb|FL212152.1|FL212152
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|16925475|gb|BM078543.1|BM078543
EST:     TTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: TTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60401116|gb|DN233923.1|DN233923
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|76933825|gb|DV173601.1|DV173601
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|22542675|gb|BU093113.1|BU093113
EST:     CCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60400384|gb|DN233191.1|DN233191
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|22818940|gb|BU499030.1|BU499030
EST:     CTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|149085100|gb|EE174607.2|EE174607
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|91871701|gb|EB401658.1|EB401658
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|78087633|gb|DV516026.1|DV516026
EST:     TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: TCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60399390|gb|DN232204.1|DN232204
EST:     CGCTTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|31357365|gb|CD441722.1|CD441722
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCANCGGCGGCG                         GTCATGTGACCCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|8665682|gb|BE186498.1|BE186498
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60357925|gb|DN224898.1|DN224898
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|78026618|gb|DV495005.1|DV495005
EST:     GCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: GCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|67020859|gb|CO449608.1|CO449608
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGCG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|76013539|gb|DT940709.1|DT940709
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
EST: gi|60343978|gb|DN210951.1|DN210951
EST:     CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTG                         GTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
genomic: CGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 192

AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 194

AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 88

AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 138

AACTACAACAAGGCGCTGGAGCAGCTTGACACTGCCGTCTCCAAGGGCGACGCCTCCGCTGTCGTCCAGCTGCAGGGCGCCATCAAGTTCAACGGCGGTGgtgagtcact ... catttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC
                              tgctaac  putative branch site (score: 138)
 tcatttttc  putative PPT
 taacataattatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attcacatgtaatatttttgggaagttttccttgtattgagattgccaactaactgttcctctgctctagaagtttgctaacataattatcatttttcagGTCATGTGAACCATTCAATCTTCTGGAAGAACCTCAAGCCCATTAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -catgtaa
- - - - - - - - - - - - - - - - tgtattg
- - - - - - - - - - - - - - - - - - - - - - - caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctaa