1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcagtgcatcctccctgccgaagatccaaatatttcaagttctctctttaaaatttgcatcttgctcgtgttctaattgtgctttgggaccttgtgtagGAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAGTACTCCCACGAAGAAGAAGTGCTGCAACTGCAGGAATTCCAAATGTCTG
species | Zea mays |
transcript | GRMZM2G059678_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCCGGTGCCGCCGCAGCCAGTCCAGCGCCCCCCGGTCGCCGTTCCCTT GAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAGEST: gi|76280553|gb|DV020121.1|DV020121
genomic: CGTCCGGTGCCGCCGCAGCCAGTCCAGCGCCCCCCGGTCGCCGTTCCCTTgtgagtgtcc ... ccttgtgtagGAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAG
EST: CGTCCGGTGCCGCCGCAGCCAGTCCAGCGCCCCCCGGTCGCCGTTCCCTT GAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAG
genomic: CGTCCGGTGCCGCCGCAGCCAGTCCAGCGCCCCCCGGTCGCCGTTCCCTTgtgagtgtcc ... ccttgtgtagGAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAG
tctttaaaatttgcatcttgctcgtgttctaattgtgctttgggaccttgtgtagGAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAGTACTCCCACGAAGAAGAAGTGCTGCAACTGCAGGAATTCCAAATGTCTG
ttctaat putative branch site (score: 2)
aaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtgcatcctccctgccgaagatccaaatatttcaagttctctctttaaaatttgcatcttgctcgtgttctaattgtgctttgggaccttgtgtagGAAACCAGAGTCACCAAAACTACGGGCAAGACTGTACGAAGGGAAAGATAGTACTCCCACGAAGAAGAAGTGCTGCAACTGCAGGAATTCCAAATGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -tgcatcc
- - - - - - - cctgccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt