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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttctcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG

Basic information

species Zea mays
transcript GRMZM2G059624_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 2
--------gttagttatctttatttacatttt-gtttgcaacttgttggaagcaaggaaatagttctcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
         | ||| |||    |||  |||||  ||| |   ||  |      | |    |   |   |||| |  |     ||    ||     ||| |  ||| || ||  | |||||| |||||||||| ||||| || ||||| |  || || ||||| |||||||| || ||||||||||||||  | || ||||| ||
gtatatctctcagtaatcaaagtttttatttttattttctgtttaattattata-gtttgtgtattgaaattgttgttg--tgttcgggtgattttttgtttagGATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
--------gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttctcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
         ||||| |||    |||  ||||| ||    | || |    ||   |   || |     ||| ||  || ||   ||    ||   | | |  ||| || ||| | |||||| |||||||||| ||||| || ||||| |  || || ||||| |||||||| || ||||||||||||||  | || ||||| ||
gtatatctcttagtaatcaaagttttgattttattatttatttttatttagtttgtgtattgaaa--aatgctgttgtgttcgga----tgatttatgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 3'ss of exon 2
gt-tagttatctttatttacattttgt--ttgcaacttgttggaagcaaggaaatagttc-tcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
|| |  |||||       |  || | |  | |  | |  |  ||  |  |||  | |||| | || |    || ||    |||           | |||| || ||  |||||||| ||||||| || ||||| ||| |||| | ||| |||||||| |||||||| ||| |||||||||||||  | ||||| || ||
gtatgattatcccaccagattttatataatagagattcctaagattctcggatgttgttccttaaattatgtg-gttaccaatcaaa-------tgcagGTTACATTGGTGAGTTTGAGTATGTCGATGACCACAGATCTGGCAAGATCGTCGTTGAATTGAACGGAAGGTTGAACAAGTGTGGTGTTATCAGCCCACG

upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: AT3G46040.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttct-----caattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
                     | || | | |||||    ||   |  |    | | ||     || || ||| | ||  ||| || | |    | |  ||| || ||  | |||||| |||||||||| ||||| ||  |||| | ||| || |||||| | || || |||||||||||||||||| | |||||||||||
--------------------gtatgctagtaactttgcagagctagcgtttgattcctgtatacagttttcaagtgtaatga-tgcttcttggtttttagGTTACATTGGCGAGTTTGAGTATGTTGATGACCACAGGTCTGGTAAGATTGTTGTTGAGCTTAATGGAAGGCTGAACAAGTGTGGAGTTATCAGTCCTCG

upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S15_386V6.1 (Physcomitrella patens), 3'ss of exon 1
----------gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaatagttct--caattctcatgagtcgtgaatgttgccctttc--tacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
           | |||||  || |    |||    | | |  ||| |  || |  |  ||  | | ||  | | |        |||  ||  ||    ||    | |||| || ||| |||||   |||||    || || || ||||| || || || || |||||||||||||||||||| |||||||| |   |||||||||||| 
acgtcttagcctcagttaa-ttcaaacgcatcccatctccg-cttctgtgatgtgattaataaatgctgacgaattcgtcacttcgctaaccttcttgttagGGTTCAGGCTACATCGGTGAGC--TAGTA----GATGAACACAGAGCCGGCAGAATTGTTGTTGAGTTGAACGGCAGGCTCAACAAGTGCGATGTGATCAGTCCTC-

upper sequence: GRMZM2G059624_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S115_101V6.1 (Physcomitrella patens), 3'ss of exon 1
gttagttatctttatttacattttgtttgcaacttgttggaagcaaggaaata----gttctcaattctcatgagtcgtgaatgt-tgccctttc--tacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
  || |  |        |  |   ||   ||  ||| ||||   |  |   |     |  ||  |  || | |     | ||  | | |   |||  | |||| || ||  | |||||| |   ||| || ||||| || || || |  || || || ||| ||||||||||| |||||||||||||  |||||||||| ||
--taatagtaagggaacatgtaacgtagtcatgttggtggatcgagcgtcctttcatgagcttgaacctgacgttcttttaaaatatacatattcatttcagGCTACATTGGAGAGTTTGAACTTGTGGATGACCACAGGGCAGGGAAAATTGTGGTGGAGCTGAACGGCAGGTTGAACAAGTGTGGTGTGATCAGTCCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaaggaaatagttctcaattctcatgagtcgtgaatgttgccctttctacagGGTATATCAGTGAGTTTTAGTATGTTGACGACCATAGAGCTGGAAGGATAGTCGTTGAGTTGAACGGCAGGCTGAACAAGTGTGGACTGATCAGTCCTCG
                                        ttgccctttct  CT-rich tract
        aaatagtt  TA-rich tract