1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagaggtccgtttatgtgggtttcttgaacctatttttaaatcttggccaaattcagcagcactgtttgtcatgtatgaatgccaaatctgtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAATCAGGTGGCTGGAGAGATCCTGTCGTTCTTCACTCGCAATAACTTCACCG
species | Zea mays |
transcript | GRMZM2G059252_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211459639|gb|FL320022.1|FL320022
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211205135|gb|FL308049.1|FL308049
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211239457|gb|FL329556.1|FL329556
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211061088|gb|FL320228.1|FL320228
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211098830|gb|FL340510.1|FL340510
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211525826|gb|FL338594.1|FL338594
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|211166763|gb|FL323216.1|FL323216
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTGAAAGACGATGGACAGTCGATGGCGCCAAATEST: gi|60359339|gb|DN226312.1|DN226312
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
EST: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAG ATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
genomic: TCTCCGTTCCGGGGCTGTGGTCCCTCATCAAGCGCTCCGTCAAGTCCAAGgtcccggacc ... gtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAAT
ggccaaattcagcagcactgtttgtcatgtatgaatgccaaatctgtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAATCAGGTGGCTGGAGAGATCCTGTCGTTCTTCACTCGCAATAACTTCACCG
tatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaggtccgtttatgtgggtttcttgaacctatttttaaatcttggccaaattcagcagcactgtttgtcatgtatgaatgccaaatctgtggatgcagATTGTGCAAAAGACATTTGTCAAAGACGAAGGGCAGTCGATGGCGCCAAATCAGGTGGCTGGAGAGATCCTGTCGTTCTTCACTCGCAATAACTTCACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc