1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accaccagtttgttaaggcaatccactcttcagcgtggaatgttaactctaacacttgtgctgcacttcatttatccacatatgggttttgcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAGCTAGGAGGAAAGGAGAAACGTGTTGTCAAACAA
species | Zea mays |
transcript | GRMZM2G058745_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACAGCCTCCCCACCGG AGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGEST: gi|149104506|gb|EE289955.2|EE289955
genomic: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACAGCCTCCCCACCGGgtaaacggct ... gcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCG
EST: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACAGCCTCCCCACCGG AGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGEST: gi|148968085|gb|EE019415.2|EE019415
genomic: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACAGCCTCCCCACCGGgtaaacggct ... gcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCG
EST: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACCGCCTCCCCACCGG AGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCG
genomic: CACGCGCAGCTCAAGATGCTCATTAGCTACGTCGACAGCCTCCCCACCGGgtaaacggct ... gcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCG
actctaacacttgtgctgcacttcatttatccacatatgggttttgcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAGCTAGGAGGAAAGGAGAAACGTGTTGTCAAACAA
ctctaac putative branch site (score: 2)
ttttgcttct putative PPT
ttcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaccagtttgttaaggcaatccactcttcagcgtggaatgttaactctaacacttgtgctgcacttcatttatccacatatgggttttgcttctgcagAGATGAACATGGGCTGTTTTATGCACTGGATCTTGGAGGGACCAACTTCCGTGTGCTGCGAGTCCAGCTAGGAGGAAAGGAGAAACGTGTTGTCAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA