1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggatttgaagcagggcaccttgaggctcctttgttttccttagcctgcttcctgattactaattagactgatttgattttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCATGGCTCTTGCACAGCACCCTGTTGTCAATGCTAGCTGCAGGGATGGAA
species | Zea mays |
transcript | GRMZM2G058702_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTATGAAAAG GTTAAGCCAAAGGGACTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCEST: gi|78027609|gb|DV495996.1|DV495996
genomic: TGTATGAAAAGgtaaggattt ... attttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCC
EST: ACGAGCTGTATGAAAAG GTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCEST: gi|15053899|gb|BI359444.1|BI359444
genomic: ACGAGCTGTATGAAAAGgtaaggattt ... attttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCC
EST: GCGTTGGGTACCCCATTATTACTGATAAACTCGACGAGCTGTATGAAAAG GTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCEST: gi|32939307|gb|CF044126.1|CF044126
genomic: GCGTTGGGTACCCCATTATTACTGATAAACTCGACGAGCTGTATGAAAAGgtaaggattt ... attttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCC
EST: CCATTATTACTGATAAACTCGACGAGCTGTA-GAAAAG G-TAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCEST: gi|32942394|gb|CF047213.1|CF047213
genomic: CCATTATTACTGATAAACTCGACGAGCTGTATGAAAAGgtaaggattt ... attttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCC
EST: ACCCCATTATTACTGATAAACTCGACGAGCTGTATGAAAAG GTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCGGCC
genomic: ACCCCATTATTACTGATAAACTCGACGAGCTGTATGAAAAGgtaaggattt ... attttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCC
ttgttttccttagcctgcttcctgattactaattagactgatttgattttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCATGGCTCTTGCACAGCACCCTGTTGTCAATGCTAGCTGCAGGGATGGAA
attactaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatttgaagcagggcaccttgaggctcctttgttttccttagcctgcttcctgattactaattagactgatttgattttgacagGTTAAGCCAAAGGGAGTGACAATGACAGTGCTGCTGGCGAAGGCTGCAGCCATGGCTCTTGCACAGCACCCTGTTGTCAATGCTAGCTGCAGGGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA