1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgctgggggtgagtttccacaacgagtgacacttccatctgtggaccttttcgtttttctgaaacggaggcaggatttgctaacgccatatccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGGGTCCAAAAGGAATG
species | Zea mays |
transcript | GRMZM2G058276_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGEST: gi|211335042|gb|FL425887.1|FL425887
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGEST: gi|9952534|gb|BE639117.1|BE639117
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGEST: gi|211489860|gb|FL134674.1|FL134674
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGAGCGCGCCAGGATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGTGAAGACCACATTGEST: gi|60400200|gb|DN233007.1|DN233007
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGEST: gi|211346060|gb|FL392059.1|FL392059
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
EST: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATG GCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
genomic: GGGTTCTCAAGGATGACGCCGTCGAGGAGAAGGGCGACCGCGCCAGAATGgtaagaccgc ... atccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTG
accttttcgtttttctgaaacggaggcaggatttgctaacgccatatccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGGGTCCAAAAGGAATG
tgctaac putative branch site (score: 241)
tatcctt putative PPT
tttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgggggtgagtttccacaacgagtgacacttccatctgtggaccttttcgtttttctgaaacggaggcaggatttgctaacgccatatccttgcagGCATCGTTTGTTGGGGCCATGGCAATCTCGGATTTGGCGAAGACCACATTGGGTCCAAAAGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gtgctgg
- - - - - - - - -ccacaac
- - - - - - - - - - - - - - - - - -ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa