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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatctcctttttgttcagtttaaaccagaacattttgttttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG

Basic information

species Zea mays
transcript GRMZM2G058252_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18176423|gb|BM351382.1|BM351382
EST:     AGGANAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: AGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|9733260|gb|BE512012.1|BE512012
EST:     AGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: AGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|18168539|gb|BM338379.1|BM338379
EST:     GCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|9953187|gb|BE639770.1|BE639770
EST:     CCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCGTTCTGTGGACTCATATATGNAATCTCCAG
genomic: CCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGC-TTCTGTGGACTCATATATG-AATCTCCAG
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|15053713|gb|BI359258.1|BI359258
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|45847499|gb|CN071442.1|CN071442
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
EST: gi|15053712|gb|BI359257.1|BI359257
EST:     GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG                         GTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
genomic: GACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGGgtaagttatc ... acattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaaatactgccgctgctctttatcaaactgaaaattattatacattcccagGTTATCTTGCTTCTGTGGACTCATATATGAATCTCCAG
                                              cattccc  CT-rich tract
                      tttatcaaactgaaaa  TA-rich tract