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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatccaaagaatgaaatgagtcttgttatgtatgtttgcaatccataataaagtatggtcttacggtatatactcacttatcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG

Basic information

species Zea mays
transcript GRMZM2G058252_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os11g43620.1 (Oryza sativa), 3'ss of exon 1
--gatccaaagaatgaaatgagtcttgttatgtatgtttgcaatccataataaagtatggtcttacggtatatactcactt-atcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
   ||  | | | |||| |   |  |   |  |    || |  ||  |  | |   ||  | |   | | |   || | |  ||    | |   ||  ||||||| |||||||||||||||||||||||  |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |
acaatgtacacattgaatttgcttgtaacagatggaatttcgttcttt--ttatacatc-tttcctgttctgctcttaatggatggattgtttcttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g08090.1 (Oryza sativa), 3'ss of exon 1
-gatccaaagaatgaaatgagtcttgttatgtatgtttgcaatccataataaagtatggtcttacgg---tatatactcacttatcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
  ||    |  ||  |  |  |   |||     || |  |  |||||| || |   ||    |||     |||||||| | | ||    | |   |   ||||||| || ||||||||||| || |||||  |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |
tcatgatgattattcatggtattcagttccaagtggtgcc--tccata-tacatcttgtctatactcttttatatact-attaatggattgtttctaaatgcagACTGTGCCAGTTAACCCGAAGCCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAAGTGGGGTATGGAATACAAAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G07060.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------gatccaaagaatgaaatgagt-cttgttatgtatgtttgcaatccataataaagta--tggtcttacggtatatactcacttatcagc----tctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
                                                                            |   |  || |  ||||  | || | | ||  ||| |  ||      |  | ||   |  |  | |  ||| | || | ||||   |    ||  ||||| |||||||  | |||||||| || || |||||  |||||||  |||| || |||||||| ||||| ||||| |||||||| |||||||||||||
gtgagtaccttcttcttgcactccctttacttaatcatcttccatttatttcattcacttaacctgcatcttcataactgagtgatttcaatgcttgctcgctttgagtgtgtagaaggtcacacgatgtgattaattgtgccttattttctaatttattttcgtcctcgtgttttttgcagACTATACCAGTTAATCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCTGTAATTGTGAAACTGAAGTGGGGAATGGAGTACAAGG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G21250.1 (Glycine max), 3'ss of exon 1
gatccaaagaatgaaatgagtcttgttatgtatgtttgcaatc-cataataaagtatggtcttacggtatatactcacttatc---agctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
     |  || |  ||||   ||     ||  |||      || || |||    | |  |  | |  ||| |  | | ||||      ||  |  ||| |||||||  ||||||||||||| || |||||  |||||||  |||| || ||||| || ||||| |||||||||||||| |||||||||||||
agctgagcgatttcaatg---ctcacattgagtgtagaaggtcacacaatgtgat-taattgtgccttattttttaatttattctggtcttcctgtttttgcagACTATTCCAGTTAACCCCAAGCCTTTCTTGAACAATTTGACTGGGAAGCCCGTAATTGTGAAACTCAAGTGGGGAATGGAGTACAAGG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv00s0220g00030.t01 (Vitis vinifera), 3'ss of exon 1
-------------------------------------------------------------gatccaaagaatgaaatgagtctt-------gttatgtatgtttgcaatccataataaagtatggtcttacggtatatactcacttat-cagctctcgttttgt--gcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
                                                               | || |   | |  |  ||||        |  |    | ||  | |   | || |||  |   |   |   |  | |    |||||     | | ||| |||  ||||||||| ||| | ||||| || || ||  |||| ||| |||| || |||||||| |||||||||||||||||||| ||||||||||| |
gtaagtagttgattttatttatttatttttaagttattattattaattttcgtggagaattatttcataaggttatgttcgtctgcaggaaagagaaaatttttcccgagaaaaaaaaaaaaaaaatagaaatctggaaatgttcttatatgaatgttgttatgtttgcagACCGTACCACTGAACCCTAAGCCCTTCTTGAATAACTTGACTGGGAAGCCTGTCATTGTCAAACTCAAGTGGGGAATGGAGTACAAAG

upper sequence: GRMZM2G058252_T01 (Zea mays), 3'ss of exon 1
lower sequence: PP1S219_41V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gatccaaagaatgaaatgagtcttgttatgtatgtttgc-aatccataataaagtatggtcttacggtatatactcacttatcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
       | |     || |||| ||| |    || |  | || |    ||      | | ||   || ||    | || | || | | | |      |     || |||| || || || || || || || ||||||||| || |||| || ||||| || ||||| |||||||||||||| ||||||||||| |
tgattgtgttttctggagtgaagtgaatgagtttcttaaggtgtattgattagctttgaggt---gttttgaaattta-attcgcgtgtaaa----tgagccttgtagACAGTGCCTGTGAATCCGAAGCCCTTTCTGAACGACTTGACTGGGAAGCCGGTCATTGTGAAACTCAAGTGGGGCATGGAGTACAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211439749|gb|FL418521.1|FL418521
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211084505|gb|FL378043.1|FL378043
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|40336095|gb|CK370165.1|CK370165
EST:     GCGCCGACGAGCGACGATAAGAGCTACTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211311342|gb|FL401413.1|FL401413
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211450560|gb|FL421157.1|FL421157
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211500293|gb|FL429987.1|FL429987
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211401205|gb|FL425452.1|FL425452
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|32906951|gb|CF011764.1|CF011764
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACATCCTGACAGG-AAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211443716|gb|FL399729.1|FL399729
EST:     GCGCCGACGAGCGACGACAANAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211104786|gb|FL388174.1|FL388174
EST:     GCGCCGACNAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211445444|gb|FL381391.1|FL381391
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211443104|gb|FL373028.1|FL373028
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211024433|gb|FL373972.1|FL373972
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211437155|gb|FL418511.1|FL418511
EST:     ACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: ACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211302695|gb|FL370644.1|FL370644
EST:     GCGCCGACGAGCAACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211045553|gb|FL403377.1|FL403377
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211125625|gb|FL408259.1|FL408259
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         G
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcag-
EST: gi|211125625|gb|FL408259.1|FL408259
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         G
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcag-
EST: gi|213182763|gb|FM187281.1|FM187281
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211303208|gb|FL395167.1|FL395167
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|76292086|gb|DV031654.1|DV031654
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTTTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|91878488|gb|EB408445.1|EB408445
EST:     CAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: CAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211394994|gb|FL377436.1|FL377436
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211429137|gb|FL408427.1|FL408427
EST:     GCGCCGACGAGCGACGAC-AGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|60347187|gb|DN214160.1|DN214160
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211436448|gb|FL384524.1|FL384524
EST:     GTGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211278511|gb|FL371989.1|FL371989
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|9733261|gb|BE512013.1|BE512013
EST:     GCGCCGACGAGCGACGATAAGAGCTACTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAG-TAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211313369|gb|FL401428.1|FL401428
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211286499|gb|FL423658.1|FL423658
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211539230|gb|FL395839.1|FL395839
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|76292087|gb|DV031655.1|DV031655
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211542426|gb|FL402997.1|FL402997
EST:     GCGCCGACGAGCGACGACGAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211309012|gb|FL381284.1|FL381284
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|32930046|gb|CF034858.1|CF034858
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|32908639|gb|CF013452.1|CF013452
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGGTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211092578|gb|FL396358.1|FL396358
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211539434|gb|FL405542.1|FL405542
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|60359558|gb|DN226531.1|DN226531
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|18176857|gb|BM351790.1|BM351790
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211514457|gb|FL429043.1|FL429043
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211334839|gb|FL416312.1|FL416312
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCARTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211531121|gb|FL427366.1|FL427366
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|6956550|gb|AW428645.1|AW428645
EST:     GCGCCGACGAGCGACGATAAGAGCTACTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211197152|gb|FL410127.1|FL410127
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAACCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211530711|gb|FL414632.1|FL414632
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211521185|gb|FL395740.1|FL395740
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211154870|gb|FL390962.1|FL390962
EST:     GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|91878487|gb|EB408444.1|EB408444
EST:     CAAGAACTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: CAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|32909820|gb|CF014632.1|CF014632
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211092584|gb|FL396364.1|FL396364
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|211431945|gb|FL418470.1|FL418470
EST:     GCGCCGACGAGCGACGACAAGAGCTGCTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
EST: gi|22133617|gb|BQ833807.1|BQ833807
EST:     GCGCCGACGAGCGACGATAAGAGCTACTCTATTCTTCAAAACAAATGGCG                         ACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT
genomic: GCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 627

CCCGTTTCGTCCTCGCGGCATTCGCGGCGTTTTCTCCCTCTGCTCGAACCGCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 436

CCCGTTTCGTCCTCGCGGCATTCGCGGCGTTTTCTCCCTCTGCTCGAACCGCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 477

CCCGTTTCGTCCTCGCGGCATTCGCGGCGTTTTCTCCCTCTGCTCGAACCGCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 258

CCCGTTTCGTCCTCGCGGCATTCGCGGCGTTTTCTCCCTCTGCTCGAACCGCGCCGACGAGCGACGACAAGAACTGCTCTATTCTTCAAAACAAATGGCGgtaagctatt ... ttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taataaagtatggtcttacggtatatactcacttatcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG
                         tactcac  putative branch site (score: 258)
                                       ctctcgtttt  putative PPT
                     tatatact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatccaaagaatgaaatgagtcttgttatgtatgtttgcaatccataataaagtatggtcttacggtatatactcacttatcagctctcgttttgtgcagACCGTTCCAGTTAACCCAAAACCTTTTCTGAACAACCTGACAGGAAAGCCTGTTATTGTCAAACTCAAGTGGGGTATGGAGTACAAGG

- -ccaaagaa
- - - - - -tgaaatg
- - - - - - - - - - - - - - - - tgtttgc