Sequence
atgc intronic sequence ATGC exonic sequencegtacagaatttacacagccatgtaattgtgtgaaacgtgcataattttttttttttcagttttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G058141_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g52690.1 (Oryza sativa), 3'ss of exon 10
gtacag-aatttacacagccatgtaattgt-gtgaaacgtgcata-attttttttttttcagttttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
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gtaaattgatttacacaaccatacaattgccataagatgtgcatatatgcttacggttgcaactcttc--tgtcaacctcagGCAAGATCTGCACGGCCATGTGTAATTTTCTTTGATGAGCTTGATTCCCTTGCTCCTGCACGAGGATCCTCCTCAGATTCCGCAGGTGTGATGGATAGAG
upper sequence: GRMZM2G058141_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA19G39580.1 (Glycine max), 3'ss of exon 10
----------------------------------------------gtacagaatttacacagccatgtaattgtgtg--aaacg---tgcataattttttttttttcagtt--ttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
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gtataataatattccggatttttttatctaaataatttctcaatttgagtaaatgtgtttgtgcctttttactgtgaactaaacagttttcagaacagattttgataaaatgaacttcaaaataattcacagGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGAGGTGCCTCTGGAGATTCTGGGGGTGTTATGGACAGAG
upper sequence: GRMZM2G058141_T02 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 3'ss of exon 10
------------gtacagaatttacacagccatgtaattgtgtgaaacgt---gcataattttttttttttcagttttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
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gtaaagatattcttatgtgatt-agaatgccttgttttgctctaacatgttttggttgacctcacaattctgtgacattgggcatcctttgtagGCAAGGTCAGCACGTCCATGTGTTATCTTCTTTGATGAACTTGATTCTCTTGCTCCAGCCCGAGGTGCCTCTGGGGATTCTGGGGGTGTTATGGACAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attgtgtgaaacgtgcataattttttttttttcagttttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
ttttttttttttcagt CT-rich tract
ataatttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagaatttacacagccatgtaattgtgtgaaacgtgcataattttttttttttcagttttccactgtcaatctcagGCTAGGTCTGCACGCCCATGTGTCATTTTCTTTGATGAGCTTGATTCCCTCGCTCCTGCACGAGGATCCTCAGCAGATTCTGGCGGTGTCATGGACAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA