Sequence
atgc intronic sequence ATGC exonic sequence...ttgagactaaaagttgtttttatgtatgatagtttgcagtagtacttatacatatactgctcttttccaaaatgctgactgatttacactctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCTGAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057408_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g45840.2 (Oryza sativa), 3'ss of exon 7
ttgagactaaaagttgtttttatgtatgatagtttgcagtagtacttatacatatactgctcttttccaaaatgctgactgatttacact--ctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCTGAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCC-
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atgtcaataagggcatattttatgttctaca--caacacttgcatttgacttcgatttgttatagtgcaatgtcctgacattttgactctacctgattgcagCTGAGCTTGCTGTCATCATGTAATTCTGGTGG---GGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20802343|gb|BQ293393.1|BQ293393EST: ATAGGCAGTGCAATCCTAATTCCTAAGGTGCGACAGTAATAGGAGAAGAG CGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGG
genomic: ATAGGCAGTGCAATCCTAATTCCTAAGGTGCGACAGTAATAGGAGAAGAGgtatggaagg ... ctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGG
EST:
gi|78544221|gb|DV621719.1|DV621719EST: ATAGGCAGTGCAATCCTAATTCCTAAGGTGCGACAGTAATAGGAGAAGAG CGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCT
genomic: ATAGGCAGTGCAATCCTAATTCCTAAGGTGCGACAGTAATAGGAGAAGAGgtatggaagg ... ctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatacatatactgctcttttccaaaatgctgactgatttacactctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCTGAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCC
atatact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgagactaaaagttgtttttatgtatgatagtttgcagtagtacttatacatatactgctcttttccaaaatgctgactgatttacactctgattgcagCGGAGGTTGCTATCATCATATAGCTATGGTGGCGCGGACCATGTCAAATCTGAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC