1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgacaagctgttgtctgatttaggaacttcacttagcagtgtgttcctttattctgtttttgttttctcttgtaaccttatgctttctccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACCAGCATCCACTGCACCTGCAGCCAACCAAGAACCTACCACTGCTGCTCC
species | Zea mays |
transcript | GRMZM2G057158_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|148941332|gb|EC886240.2|EC886240
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|211122355|gb|FL034206.1|FL034206
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGAWCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACWGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|94480135|gb|EB709093.1|EB709093
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGACACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|76929924|gb|DV172221.1|DV172221
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|26457469|gb|CA829052.1|CA829052
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|213174821|gb|FM189465.1|FM189465
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|21432104|gb|BQ547594.1|BQ547594
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|148940781|gb|EC885603.2|EC885603
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|211122354|gb|FL034205.1|FL034205
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACEST: gi|211122356|gb|FL034207.1|FL034207
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCAC
EST: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACG GTGYGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCG
genomic: GATCTACAAGGGCCGGATCTTGAAGGACGAGCAAACCCTAGCCAGCTACGgtgcgtgctt ... ccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCG
ttcctttattctgtttttgttttctcttgtaaccttatgctttctccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACCAGCATCCACTGCACCTGCAGCCAACCAAGAACCTACCACTGCTGCTCC
ttgtaac putative branch site (score: 2)
ccttatgctttctcct CT-rich tract
tttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgacaagctgttgtctgatttaggaacttcacttagcagtgtgttcctttattctgtttttgttttctcttgtaaccttatgctttctccttttgaagGTGTGGAGACAGACCATACAATCCACATGGTACGTGGTGCTGCGCCACCACCAGCATCCACTGCACCTGCAGCCAACCAAGAACCTACCACTGCTGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT