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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgcctactagtagcagcttagcagtagtcttgttgtttactactagagatcaggaacgtagaaacgaaaaatgctctctttcgttctgttgctcaaggctttatgacccttttgtaattctactagggttcatgctcttttaccagaagaagattgtaatgacgatgttctgttctatcgtttaaagGCCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAGCTAGCACTGGACGAGAAGACGGCAGCCGCGGCCGCGAGTGAGAGACAGAA

Basic information

species Zea mays
transcript GRMZM2G057067_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211486863|gb|FL126182.1|FL126182
EST:     GGGACGAAGAGGGGGTTCTTAC-ACACCACCGTCGAGGCCAAGACAGAAG                         GTCC-CGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
genomic: GGGACGAAGAGGGGGTTCTT-CGACACCGCCGTCGAGGCCAAGACAGAAGgtacgtgcct ... tcgtttaaagG-CCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
EST: gi|211486861|gb|FL126180.1|FL126180
EST:     GGGACGAAGAGGGGGTTCTTAC-ACACCACCGTCGAGGCCAAGACAGAAG                         GTCC-CGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
genomic: GGGACGAAGAGGGGGTTCTT-CGACACCGCCGTCGAGGCCAAGACAGAAGgtacgtgcct ... tcgtttaaagG-CCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
EST: gi|67042753|gb|CO469008.1|CO469008
EST:     GGGACGAAGAGGGGGTTCTTAC-ACACCACCGTCGAGGCCAAGACAGAAG                         GTCC-CGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
genomic: GGGACGAAGAGGGGGTTCTT-CGACACCGCCGTCGAGGCCAAGACAGAAGgtacgtgcct ... tcgtttaaagG-CCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAG
EST: gi|13126427|gb|BG316997.1|BG316997
EST:     TGGGACGAAGAGGGGGTTCTTCGCCACCGCCGTCGAGGCCAAGACAGAAG                         GCCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAGC
genomic: TGGGACGAAGAGGGGGTTCTTCGACACCGCCGTCGAGGCCAAGACAGAAGgtacgtgcct ... tcgtttaaagGCCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcttttaccagaagaagattgtaatgacgatgttctgttctatcgtttaaagGCCGCGACGAGCGGATGGAGCAGCAGGCCGGAGCTGGATGTGGGAACGAGCTAGCACTGGACGAGAAGACGGCAGCCGCGGCCGCGAGTGAGAGACAGAA
                                        ttctatc  CT-rich tract
                    attgtaat  TA-rich tract