Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctacgcgtcgcagcggaactgcaatggctttgaaattaggatcgtggtattacagttcagaatttctcacattttctttgtgatcgtaactaaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGTATGTCTACGAGTTGCCGACCAAGTACAACAAGAAGATGGTGGCTAAAGA

Basic information

species Zea mays
transcript GRMZM2G056702_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056702_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g70190.1 (Oryza sativa), 3'ss of exon 1
ctacgcgtcgcagcggaactgcaatggctttgaaattaggatcg-tggtattacagttcagaatttctcacattttctttgtgatcgtaactaaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGTATGTCTACGAGTTGCCGACCAAGTACAACAAGAAGATGGTGGCTAAAGA
  |         | | | |||  | | || | |||||| | | | || ||  ||| | || |||| ||||| ||||| ||||     | || | ||   ||| ||||| ||||||||||| ||||| || || || |||||||| ||||||||||||||||||||||| || || |||||||||||||||||||| |||||
agagaaacttatgggaagctgttaggcctgtcaaattatggtggctgctaggacactacataatt-ctcactttttcattgtacatatgaccatatcttagGGAGTGCGGGTGATGTGCTGGAAGATGACCCTGTCGGGAGGCTTAAGGTGTATGTCTACGAGTTGCCCACTAAATACAACAAGAAGATGGTGGCAAAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37417098|gb|CF646202.1|CF646202
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCTAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|37423986|gb|CF649723.1|CF649723
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148962163|gb|EE012976.2|EE012976
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|91872669|gb|EB402626.1|EB402626
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149077856|gb|EE166583.2|EE166583
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71445976|gb|DR827026.1|DR827026
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149090404|gb|EE179713.2|EE179713
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148955685|gb|EC901365.2|EC901365
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149013255|gb|EE042858.2|EE042858
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149043975|gb|EE047456.2|EE047456
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148951471|gb|EC897197.2|EC897197
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149008403|gb|EE040559.2|EE040559
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148947061|gb|EC892363.2|EC892363
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71430156|gb|DR811206.1|DR811206
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|211222896|gb|FL232904.1|FL232904
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|91048368|gb|EB158786.1|EB158786
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|76284997|gb|DV024565.1|DV024565
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|37419184|gb|CF647269.1|CF647269
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148964683|gb|EC905962.2|EC905962
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|211222898|gb|FL232906.1|FL232906
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71767069|gb|DR965006.1|DR965006
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149071087|gb|EE159488.2|EE159488
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|50325531|gb|CO520657.1|CO520657
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71442524|gb|DR823574.1|DR823574
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148962339|gb|EE013175.2|EE013175
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71764094|gb|DR962031.1|DR962031
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|31909763|gb|CD651082.1|CD651082
EST:     AGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGG-GT
genomic: AGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149109269|gb|EE190110.2|EE190110
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|211222895|gb|FL232903.1|FL232903
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|71326922|gb|DR800122.1|DR800122
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149000409|gb|EE037579.2|EE037579
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|94473193|gb|EB702151.1|EB702151
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148967632|gb|EE018888.2|EE018888
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|211222894|gb|FL232902.1|FL232902
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|93281666|gb|EB673930.1|EB673930
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148952079|gb|EC897870.2|EC897870
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|211222897|gb|FL232905.1|FL232905
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|91877857|gb|EB407814.1|EB407814
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149070619|gb|EE159030.2|EE159030
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148936286|gb|EC880367.2|EC880367
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|76020818|gb|DT947988.1|DT947988
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|149044945|gb|EE047747.2|EE047747
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148956918|gb|EC902847.2|EC902847
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|101390206|gb|EB817036.1|EB817036
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
EST: gi|148930698|gb|EC872947.2|EC872947
EST:     CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAG                         GAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT
genomic: CTCTGGCGCCGTCGCTGTCGCCAGGGCGCAGGACACCGAGCGGATCGAAGgtatgcccgc ... taaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtattacagttcagaatttctcacattttctttgtgatcgtaactaaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGTATGTCTACGAGTTGCCGACCAAGTACAACAAGAAGATGGTGGCTAAAGA
                                          aactaaa  putative branch site (score: 2)
                                         taactaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctacgcgtcgcagcggaactgcaatggctttgaaattaggatcgtggtattacagttcagaatttctcacattttctttgtgatcgtaactaaattccagGAAGTGCTGGTGATGTGCTCGAAGACGATCCCGTTGGGAGGCTCAAGGTGTATGTCTACGAGTTGCCGACCAAGTACAACAAGAAGATGGTGGCTAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG