1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtctacacgcaccgcaacggatccttctccgtccggatccgccatcgattttggtcgcccgccagtcaatcgccggacgcggcgtgaatctaattgcccggatccaccccgtccttaccgccgctttgtttctttccctggacggccgcccggatcctcctcgcctgacatctcctttctcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCGGCAGCAAG
species | Zea mays |
transcript | GRMZM2G056573_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCAG GTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCGEST: gi|211122282|gb|FL031386.1|FL031386
genomic: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCAGgtgagtctac ... tcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCG
EST: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCGG GTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCGEST: gi|211409691|gb|FL229014.1|FL229014
genomic: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCAGgtgagtctac ... tcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCG
EST: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCAG GTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCG
genomic: CGGGCCAAGGAATCGTTCTCATCCGGCGACCTACCTCCGTTACGTCTCAGgtgagtctac ... tcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCG
tccctggacggccgcccggatcctcctcgcctgacatctcctttctcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCGGCAGCAAG
gcctgac putative branch site (score: 173)
tcctcctcgcctgaca CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctacacgcaccgcaacggatccttctccgtccggatccgccatcgattttggtcgcccgccagtcaatcgccggacgcggcgtgaatctaattgcccggatccaccccgtccttaccgccgctttgtttctttccctggacggccgcccggatcctcctcgcctgacatctcctttctcgttttcagGTCTTGTTCTGTATCACAAGCAAAGCAAAGGATCGGAGGCTACTCCATTCGGCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG