1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcatttttatttatttatataaattgtggcaagtggtgatggtgtgcttgtagcatatctagaataattgacaaggaatttctaaaaaataaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGCAAAATATTTGCTGAATACCAGCGTCGGCTACATCAGTTTGTCAACCAA
species | Zea mays |
transcript | GRMZM2G055917_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAG GCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGEST: gi|60358142|gb|DN225115.1|DN225115
genomic: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaa ... taaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
EST: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAG GCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGEST: gi|211255976|gb|FL016717.1|FL016717
genomic: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaa ... taaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
EST: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAG GCACAAGCAAGTTATGCTNTAAGCATATGAACAGCAATGCGACGAAGCATGEST: gi|211253530|gb|FL016705.1|FL016705
genomic: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaa ... taaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
EST: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAG GCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGEST: gi|211255971|gb|FL016712.1|FL016712
genomic: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaa ... taaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
EST: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAG GCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
genomic: AGGGAGGAGGCGGAGCGCAAGCGCGTCCTTGGCGAGCGCTCCAATGCCAGgtacctaaaa ... taaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATG
tgcttgtagcatatctagaataattgacaaggaatttctaaaaaataaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGCAAAATATTTGCTGAATACCAGCGTCGGCTACATCAGTTTGTCAACCAA
ttctaaa putative branch site (score: 25)
aataattgacaaggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttttatttatttatataaattgtggcaagtggtgatggtgtgcttgtagcatatctagaataattgacaaggaatttctaaaaaataaaaaatagGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGCAAAATATTTGCTGAATACCAGCGTCGGCTACATCAGTTTGTCAACCAA
ttcattt
- - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - -tgcttgt