1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gctttctgtacagtacagctctcgcgtaacgtaactaaccgtagaattaatatagtacaagataccatcagctagcagcgcctaaatacacatgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAAAGGCGAGACGATACACACCATCAGCGAGGCCCTCCTGGAGGACTGTGCG
species | Zea mays |
transcript | GRMZM2G055898_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTG GTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAAEST: gi|60345972|gb|DN212945.1|DN212945
genomic: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTGgtacgtacgt ... catgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAA
EST: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTG GTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAAEST: gi|78088011|gb|DV516404.1|DV516404
genomic: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTGgtacgtacgt ... catgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAA
EST: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTG GTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAA
genomic: AAGAACGAGAACGAGGAGCTCATCAAATACGGCCTCCCCGAGGACGTCTGgtacgtacgt ... catgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAA
attaatatagtacaagataccatcagctagcagcgcctaaatacacatgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAAAGGCGAGACGATACACACCATCAGCGAGGCCCTCCTGGAGGACTGTGCG
gcctaaa putative branch site (score: 13)
taaataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttctgtacagtacagctctcgcgtaacgtaactaaccgtagaattaatatagtacaagataccatcagctagcagcgcctaaatacacatgttgcagGTTCCATGTGGACAAGGTATCCTCGGCACACGTCTACCTGAGGCTAAAGAAAGGCGAGACGATACACACCATCAGCGAGGCCCTCCTGGAGGACTGTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - -ctgtaca
- - - - - - -tacagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataca