1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcggtaactatactttcgcttctcgttcccatgcctgtcgtttcagttgtatttgtgtgtttgctgttgcttttcgaacatgtttaatactgatgcgtgtgcttactgatgaggtgatcacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCTGCCACATAG
species | Zea mays |
transcript | GRMZM2G055667_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCEST: gi|149001245|gb|EE038521.2|EE038521
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCEST: gi|149076117|gb|EE164700.2|EE164700
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCEST: gi|211366507|gb|FL067549.1|FL067549
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCEST: gi|211366505|gb|FL067547.1|FL067547
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCEST: gi|211366506|gb|FL067548.1|FL067548
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
tcgaacatgtttaatactgatgcgtgtgcttactgatgaggtgatcacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCTGCCACATAG
tactgat putative branch site (score: 2)
atgtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtaactatactttcgcttctcgttcccatgcctgtcgtttcagttgtatttgtgtgtttgctgttgcttttcgaacatgtttaatactgatgcgtgtgcttactgatgaggtgatcacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCCTGCCACATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA