1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgtttcgcggctgcgtgtctgcgcgtggcctctttacttgtccggttgtccctagcgcgtgtcctgtcctcttgctcatgcccttccgcgcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG
species | Zea mays |
transcript | GRMZM2G054559_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCCCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|149001156|gb|EE038421.2|EE038421
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|148987618|gb|EE031492.2|EE031492
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|110523052|gb|EE027236.1|EE027236
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|211440462|gb|FL223426.1|FL223426
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: AATCACGGTGACCTTGCCCTCGCTGCCCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|22489590|gb|BU049513.1|BU049513
genomic: AATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCCCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|149103877|gb|EE289291.2|EE289291
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCEST: gi|148931360|gb|EC874259.2|EC874259
genomic: CCGTCGTCATCAATCACGGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
EST: GGTGACCTTGCCCTCGCTGCTCGACTGGAACCG GACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
genomic: GGTGACCTTGCCCTCGCTGCTCGACTGGAACCGgtaatcttgc ... gcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGC
gttgtccctagcgcgtgtcctgtcctcttgctcatgcccttccgcgcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG
cccttccgcgcttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtttcgcggctgcgtgtctgcgcgtggcctctttacttgtccggttgtccctagcgcgtgtcctgtcctcttgctcatgcccttccgcgcttccgcagGACGCTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG
- - - -gcggctg
- - - - - - - - tgtctgc
- - - - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcctg