1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaacgttctaaaccagaaaccaaaatgcttgataacattttaatcaacctcaaacttttttaacgctgtggatgtgtttattttcatttcattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACAGTCATGAAGTCGTTAGCCAAGCAAGAGACACAGCCAAAATCGCGGCTC
species | Zea mays |
transcript | GRMZM2G054470_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACEST: gi|78118750|gb|DV537134.1|DV537134
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACEST: gi|93016995|gb|EB642515.1|EB642515
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACEST: gi|211073736|gb|FL043533.1|FL043533
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: GGAAGCATCTTGGCGTACGTGCCGCCGGCRACAAGCACCCACCACACCAG TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACEST: gi|211073735|gb|FL043532.1|FL043532
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
caacctcaaacttttttaacgctgtggatgtgtttattttcatttcattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACAGTCATGAAGTCGTTAGCCAAGCAAGAGACACAGCCAAAATCGCGGCTC
ttttaac putative branch site (score: 2)
ttttcatttcatttt putative PPT
tgtttattttcatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaacgttctaaaccagaaaccaaaatgcttgataacattttaatcaacctcaaacttttttaacgctgtggatgtgtttattttcatttcattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTACAGTCATGAAGTCGTTAGCCAAGCAAGAGACACAGCCAAAATCGCGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA