Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|12045796|gb|BF727935.1|BF727935EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|91873254|gb|EB403211.1|EB403211EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|89252141|gb|DY623927.1|DY623927EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|74244865|gb|DT652779.1|DT652779EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCG
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCG
EST:
gi|211282122|gb|FL372019.1|FL372019EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAAC-TCGACACCTACTGGCA GTCTGATGGGGCGCAGC
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGC
EST:
gi|211201873|gb|FL396465.1|FL396465EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACNACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|71432068|gb|DR813118.1|DR813118EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|149073064|gb|EE161334.2|EE161334EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|211341306|gb|FL394252.1|FL394252EST: GGCAACGGCGTCGCGGCC-TGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGC
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGC
EST:
gi|71427966|gb|DR809016.1|DR809016EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|78180912|gb|DV551285.1|DV551285EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST:
gi|71297610|gb|DR784754.1|DR784754EST: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
44 (downstream exon)
Score:
24TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGTGCAGCTGCAG
Block sizes:
48 (upstream exon),
16 (downstream exon)
Score:
24TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGTGCAGCTGCAG
Block sizes:
49 (upstream exon),
44 (downstream exon)
Score:
26TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGTGCAGCTGCAG
Block sizes:
49 (upstream exon),
47 (downstream exon)
Score:
17TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGTGCAGCTGCAG