1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactgactgcgctggcttaaattgattacgtctatttcttgtatcgttggcaagtaatcctcgccttacttgttcgtgttgttcttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGAGGAAGCTCAAGTTCCATGAGCAGAAGCTCCTCAAGAGGCACAATTTCT
species | Zea mays |
transcript | GRMZM2G053767_T04 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGEST: gi|211245448|gb|FK950836.1|FK950836
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGEST: gi|9952730|gb|BE639193.1|BE639193
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGEST: gi|211245447|gb|FK950835.1|FK950835
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGEST: gi|211245443|gb|FK950831.1|FK950831
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGEST: gi|211245442|gb|FK950830.1|FK950830
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
EST: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTG TTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
genomic: AACCACTTCTCTGTCGAGAGGCGTCGCGCTCCTCTCTTCGCCCTCTGCTGgtactgactg ... cttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATG
ttgtatcgttggcaagtaatcctcgccttacttgttcgtgttgttcttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGAGGAAGCTCAAGTTCCATGAGCAGAAGCTCCTCAAGAGGCACAATTTCT
gccttac putative branch site (score: 80)
ttgttcttcc putative PPT
aagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgactgcgctggcttaaattgattacgtctatttcttgtatcgttggcaagtaatcctcgccttacttgttcgtgttgttcttccggcagTTATTTTTCTTAACCCGGCTTTCTCTCGATTGCTGCGTAAAGTTGAAGATGAGGAAGCTCAAGTTCCATGAGCAGAAGCTCCTCAAGAGGCACAATTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG