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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actatggctttgcatgcccaagtgttgttgttatcgttaccaagatcatcgctaccactgatgactgatgcagtacgttcgtgatgaactgtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGCAGCTTCCGAGCATCTCCGCACCACGCACCACGTCCGAAGGCGCGGGGGG

Basic information

species Zea mays
transcript GRMZM2G053298_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149087128|gb|EE176666.2|EE176666
EST:     CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA                         GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
EST: gi|149107107|gb|EE188997.2|EE188997
EST:     CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA                         GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
EST: gi|93015063|gb|EB640583.1|EB640583
EST:     CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA                         GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatcgctaccactgatgactgatgcagtacgttcgtgatgaactgtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGCAGCTTCCGAGCATCTCCGCACCACGCACCACGTCCGAAGGCGCGGGGGG
                 gactgat  putative branch site (score: 3)