Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgtttactaatatattgcatataccgacttgcttgagactaaagaattttgttgttactgctgctgaattcataaatatttgtgctttgacaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG

Basic information

species Zea mays
transcript GRMZM2G052880_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052880_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g25580.1 (Oryza sativa), 3'ss of exon 1
gtgtttactaatatattgcatataccgacttgcttgagactaaagaattttgttgttactgctgctgaattca----taaatatttgtgctttgacaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG
   |  |  |  |   |   | |      ||||   ||  ||     |||  |    |  ||  ||  ||| |    |   | ||| |||| |||| | ||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||||
---tcaaggagcactgttattgtctgtttttgcacaagcttatctgctttcatatagaaagcacctccatttaaccttttttttttttgctgtgacca-tgcagGTTTATTATTTGAAATGCTCAGGTCAACTAGGAAACATTCAAAATCAACATGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211376580|gb|FL160476.1|FL160476
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371250|gb|FL160440.1|FL160440
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373914|gb|FL160460.1|FL160460
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371256|gb|FL160446.1|FL160446
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371258|gb|FL160448.1|FL160448
EST:     TTCCTCGCANNNNNNNNACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211504197|gb|FL160497.1|FL160497
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373918|gb|FL160464.1|FL160464
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373920|gb|FL160466.1|FL160466
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|50336915|gb|CO532041.1|CO532041
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373917|gb|FL160463.1|FL160463
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371251|gb|FL160441.1|FL160441
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501864|gb|FL160492.1|FL160492
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373908|gb|FL160454.1|FL160454
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376585|gb|FL160481.1|FL160481
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501859|gb|FL160487.1|FL160487
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCNAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376576|gb|FL160472.1|FL160472
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376575|gb|FL160471.1|FL160471
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|76280654|gb|DV020222.1|DV020222
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501861|gb|FL160489.1|FL160489
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373910|gb|FL160456.1|FL160456
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373916|gb|FL160462.1|FL160462
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376571|gb|FL160467.1|FL160467
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371255|gb|FL160445.1|FL160445
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501867|gb|FL160495.1|FL160495
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376582|gb|FL160478.1|FL160478
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501856|gb|FL160484.1|FL160484
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373909|gb|FL160455.1|FL160455
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376572|gb|FL160468.1|FL160468
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501854|gb|FL160482.1|FL160482
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376574|gb|FL160470.1|FL160470
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211504199|gb|FL160499.1|FL160499
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371253|gb|FL160443.1|FL160443
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501857|gb|FL160485.1|FL160485
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371261|gb|FL160451.1|FL160451
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501865|gb|FL160493.1|FL160493
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376578|gb|FL160474.1|FL160474
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373907|gb|FL160453.1|FL160453
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501860|gb|FL160488.1|FL160488
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373912|gb|FL160458.1|FL160458
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501858|gb|FL160486.1|FL160486
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376583|gb|FL160479.1|FL160479
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|93015686|gb|EB641206.1|EB641206
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371257|gb|FL160447.1|FL160447
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAAAGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211501868|gb|FL160496.1|FL160496
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211371254|gb|FL160444.1|FL160444
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373911|gb|FL160457.1|FL160457
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376577|gb|FL160473.1|FL160473
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211504198|gb|FL160498.1|FL160498
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211373915|gb|FL160461.1|FL160461
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|76294182|gb|DV033750.1|DV033750
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|74234513|gb|DT642427.1|DT642427
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376573|gb|FL160469.1|FL160469
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
EST: gi|211376584|gb|FL160480.1|FL160480
EST:     TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATC                         GTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT
genomic: TTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 35

TCGCCGGCAGAGGCAAGAGACTCCGGCGCGATGTCGTTGGACTCGGAGGCTTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 95

TCGCCGGCAGAGGCAAGAGACTCCGGCGCGATGTCGTTGGACTCGGAGGCTTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 136

TCGCCGGCAGAGGCAAGAGACTCCGGCGCGATGTCGTTGGACTCGGAGGCTTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 72

TCGCCGGCAGAGGCAAGAGACTCCGGCGCGATGTCGTTGGACTCGGAGGCTTCCTCGCAGGGTGGGGACTACCGTAGCTTCCGCCAGATCACGCGAGATCgtaatccctc ... acaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgttgttactgctgctgaattcataaatatttgtgctttgacaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG
                                        ctttgac  putative branch site (score: 72)
                    tgaattcataaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtttactaatatattgcatataccgacttgcttgagactaaagaattttgttgttactgctgctgaattcataaatatttgtgctttgacaaatgcagGTTTATTATTTGAAATGCTCAGATCAACTAGGAAGAATTCGAAATCAACATGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - attgcat
- - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctt