1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacgaactcgcatccgatttccccaatactttcttcgattctttcctgttcctcaccttggttcgatctgccacgccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG
species | Zea mays |
transcript | GRMZM2G052713_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344147|gb|FL188317.1|FL188317
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|32938017|gb|CF042836.1|CF042836
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344138|gb|FL188308.1|FL188308
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|67011386|gb|CO440135.1|CO440135
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: CTCTGTCCTTTCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|32936019|gb|CF040831.1|CF040831
genomic: CTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344136|gb|FL188306.1|FL188306
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344143|gb|FL188313.1|FL188313
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCA-GGGAAAACACGGCTGGCCAAGEST: gi|211344148|gb|FL188318.1|FL188318
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211341751|gb|FL188301.1|FL188301
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344139|gb|FL188309.1|FL188309
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|60356394|gb|DN223367.1|DN223367
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344141|gb|FL188311.1|FL188311
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211341753|gb|FL188303.1|FL188303
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGEST: gi|211344137|gb|FL188307.1|FL188307
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
tttcttcgattctttcctgttcctcaccttggttcgatctgccacgccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG
tcctcac putative branch site (score: 2)
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgaactcgcatccgatttccccaatactttcttcgattctttcctgttcctcaccttggttcgatctgccacgccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAGTACTATGTCGCTCTCGAGGACTCCGAGAAGCACAAGGTTGAGTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC