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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgccaaagaggtggttaaaagtgtttacatagggaaaacgtgtgcttgagcctggatcgccaaacaagccccatttctaagcgccgtctttttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAATCTCTTGAACAACATCTTGAGTGCGGTCCCAGCCGATCTGAACAGGGAAG

Basic information

species Zea mays
transcript GRMZM2G052699_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052699_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g35910.1 (Oryza sativa), 3'ss of exon 1
cgccaaagaggtgg-ttaaaagtgtttacatagggaaaacgtgtgcttgagcctggatcgcc--aaacaagccccatttctaagcgccgtctttttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAATCTCTTGAACAACATCTTGAGTGCGGTCCCAGCCGATCTGAACAGGGAAG
     ||||  ||  ||       |||  |   |  |   ||     |||   |||   ||   ||   |||   |  |       ||| || | |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||  ||  ||||||| ||||| |||||||| |
--tataagaattgccttgggttcatttctaactgtcagtagtaattgtgattatgggatgcatgaattgagctttaagtaccttaaccg-ctgtctgttgcagCTGTTTGATGGGCACAATGGGAATGGAGCCGCGATTTACACCAAGGAGAATCTCTTGAGCAACATCTTGACCGCAATCCCAGCTGATCTCAACAGGGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211036579|gb|FL254048.1|FL254048
EST:     ATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGGGC                         CTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAA
genomic: ATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGG-Cgtaagcccac ... tttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAA
EST: gi|211036580|gb|FL254049.1|FL254049
EST:     AATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGGN                         CTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAAT
genomic: AATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGGCgtaagcccac ... tttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAAT
EST: gi|33770855|gb|CF273149.1|CF273149
EST:     AATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGGC                         CTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAAT
genomic: AATGCGAGCGCGTCCCTGACGTCCCGTCCTCCTCCTTCTCCGCCTTCGGCgtaagcccac ... tttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgagcctggatcgccaaacaagccccatttctaagcgccgtctttttgttgcagCTGTTTGATGGGCATAATGGGAACGGAGCCGCAATTTACACCAAGGAGAATCTCTTGAACAACATCTTGAGTGCGGTCCCAGCCGATCTGAACAGGGAAG
                                      ccgtcttttt  CT-rich tract
                           atttctaa  TA-rich tract