1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcggtaccccaattccctctgtcgattcgataccgtcagttcggctgtgtgaagaagtctcgctctcgcgcgcccacgctcactctctcagtcacatgctgtgttcgatgcgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGACGGTGCCCATCGTTGATCT
species | Zea mays |
transcript | GRMZM2G052479_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTG GGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGGEST: gi|211321654|gb|FL407918.1|FL407918
genomic: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTGgtcggtaccc ... cgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGG
EST: AGAGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTG GGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGGEST: gi|211173385|gb|FL087590.1|FL087590
genomic: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTGgtcggtaccc ... cgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGG
EST: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTG GGAGCACCGCGGANGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGTEST: gi|211373863|gb|FL386282.1|FL386282
genomic: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTGgtcggtaccc ... cgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGG
EST: AGAGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTG GGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGG
genomic: AGCGCGGCCGGTCCACCACCTCCTCCCTGGCGCCAAGTTCGGAGCGATTGgtcggtaccc ... cgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGG
tcgcgcgcccacgctcactctctcagtcacatgctgtgttcgatgcgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGACGGTGCCCATCGTTGATCT
cgctcac putative branch site (score: 6)
tttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggtaccccaattccctctgtcgattcgataccgtcagttcggctgtgtgaagaagtctcgctctcgcgcgcccacgctcactctctcagtcacatgctgtgttcgatgcgatttccagGGAGCACCGCGGAGGCCGCGCCGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGACGGTGCCCATCGTTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA