1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattacttggttgtatacgagacgtcttgtggcacgaccatttcttaaggtatttctcgctacaattaattggtgacaactctgttctgttccactacagGTATCTCTTGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGCTCTCTTGGTTCCTTACATTTTCTTCACTCTGCCTAATGTGCTGTTTTCT
species | Zea mays |
transcript | GRMZM2G052423_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGGGTTCGGCACTTCCTTCCTCAAGTGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGACCGCACGAACTGGAAGAMKAACATGCTGACAGCEST: gi|211063518|gb|FL294403.1|FL294403
genomic: TTGGGGTTCGGCACTTCCTTCCTCAAGTGGCTGGCCTTCCTCGCCGCAGTgtgagtgttc ... tccactacagGTATCTCTTGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGC
EST: TTGGGGTTCGGCACTTCTTTCCTCAAGTGGCTGGCCTTCCTCGCCGCAGT GTATCTCTTGATATTGGACTGCACGAACTGGAAGACCAACATGCTGACAGC
genomic: TTGGGGTTCGGCACTTCCTTCCTCAAGTGGCTGGCCTTCCTCGCCGCAGTgtgagtgttc ... tccactacagGTATCTCTTGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGC
taaggtatttctcgctacaattaattggtgacaactctgttctgttccactacagGTATCTCTTGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGCTCTCTTGGTTCCTTACATTTTCTTCACTCTGCCTAATGTGCTGTTTTCT
aattaat putative branch site (score: 75)
ctctgttctgttcc putative PPT
tacaattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattacttggttgtatacgagacgtcttgtggcacgaccatttcttaaggtatttctcgctacaattaattggtgacaactctgttctgttccactacagGTATCTCTTGATATTGGACCGCACGAACTGGAAGACCAACATGCTGACAGCTCTCTTGGTTCCTTACATTTTCTTCACTCTGCCTAATGTGCTGTTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - ttggttg
- - - - - - - - - - - - - - - - cacgacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg