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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagccaccgccaccagcttgtttctgctcatcagcgcgtagcaaaccatggctagctcttgagtccttatcatccgggtgaaccggcaccggcctgctcatgcgtgcatgtcgtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCGGATGTTCTTCTACCTCGCGTTCATGGCCAGCGGCACGCTGGGGGGCCTC

Basic information

species Zea mays
transcript GRMZM2G051952_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051952_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g42800.2 (Oryza sativa), 3'ss of exon 1
gtagccacc--gccaccagct-tgtttctgctcatcagcgcgtagcaaacc-atggctag----ctcttgagtccttatcatccgggtgaaccggcaccggcctgctcatgcgtgcatgtcgtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCGGATGTTCTTCTACCTCGCGTTCATGGCCAGCGGCACGCTGGGGGGCCTC
||||||  |  ||| ||  |  | ||  || |  |  |    | | |   | |||||| |    |||| |  || |  || ||  |||  | || ||  ||| ||||       |  | | |  ||   | |||||| || |||||| |||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |  ||| |||      
gtagccggctagccgccccccatattcttgtttctgtgttgatcggagctcgatggctggggtgctctgggctcgtcgtcgtc--ggtcgatcgtcat-ggcttgctt-----cgtttcttgcagCTCGACCTCCATGGCAAAGATAAGGAGTGAGGTGCTGTCCCCGTTCCGCTCCGTGCGGATGTTCTTCTACCTCGCGTTCATGGCCAGCGCCGGGCTCGGG------

upper sequence: GRMZM2G051952_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g42800.4 (Oryza sativa), 3'ss of exon 1
-----gtagccacc--gccaccagct-tgtttctgctcatcagcgcgtagcaaacc-atggctag----ctcttgagtccttatcatccgggtgaaccggcaccggcctgctcatgcgtgcatgtcgtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCGGATGTTCTTCTACCTCGCGTTCATGGCCAGCGGCACGCTGGGGGGCCTC
     ||||||  |  ||| ||  |  | ||  || |  |  |    | | |   | |||||| |    |||| |  || |  || ||  |||  | || ||  ||| ||||       |  | | |  ||   | |||||| || |||||| |||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||| |  ||| |||      
gtaaggtagccggctagccgccccccatattcttgtttctgtgttgatcggagctcgatggctggggtgctctgggctcgtcgtcgtc--ggtcgatcgtcat-ggcttgctt-----cgtttcttgcagCTCGACCTCCATGGCAAAGATAAGGAGTGAGGTGCTGTCCCCGTTCCGCTCCGTGCGGATGTTCTTCTACCTCGCGTTCATGGCCAGCGCCGGGCTCGGG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78114231|gb|DV532620.1|DV532620
EST:     AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGCGAGGTAAG                         CTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG
genomic: AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGCGAGGTAAGgtagccaccg ... gtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG
EST: gi|71326049|gb|DR799711.1|DR799711
EST:     AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGC---G--AG                         CTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG
genomic: AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGCGAGGTAAGgtagccaccg ... gtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG
EST: gi|211154885|gb|FL278410.1|FL278410
EST:     AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGC---G--AG                         CTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG
genomic: AACAAGCCCTCCCCTCCTCCCCCGACCACTCCGGATAGCAGCGAGGTAAGgtagccaccg ... gtcgccgcagCTCCATTGCGAAGATACGGAGTGAGGTCCTCTCCCCGTTCCGGTCGGTGCG