1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttctgaaacgaggataatcatgtgacaagctaccggtttctgtgtccaactcaccgatttcacagcatccaaattctcagccttggccgttcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAAACGGGCGCAGGGAAGCACGTTCCAAGGGCCCTGTTTGTCGACTTGGAG
species | Zea mays |
transcript | GRMZM2G051782_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTEST: gi|211542702|gb|FL070760.1|FL070760
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTT
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAEST: gi|211542706|gb|FL070764.1|FL070764
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGA
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCNTTCAGTGEST: gi|211542705|gb|FL070763.1|FL070763
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTC-TTCAGTG
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAEST: gi|211542701|gb|FL070759.1|FL070759
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGA
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAEST: gi|211542704|gb|FL070762.1|FL070762
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGA
EST: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAG TGACACCTCTGTCGGGATC
genomic: GAGCTCTACTGCCTCGAGCACGGTATCCAGCCTGACGGCCTCATGCCCAGgtgaggcccc ... tcgcttgcagTGACACCTCTGTCGGGATC
ccaactcaccgatttcacagcatccaaattctcagccttggccgttcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAAACGGGCGCAGGGAAGCACGTTCCAAGGGCCCTGTTTGTCGACTTGGAG
aactcac putative branch site (score: 126)
ttcgctt putative PPT
aaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgaaacgaggataatcatgtgacaagctaccggtttctgtgtccaactcaccgatttcacagcatccaaattctcagccttggccgttcgcttgcagTGACACCTCTGTCGGGATCGCGAGGGATGCGTTCAACACGTTCTTCAGTGAAACGGGCGCAGGGAAGCACGTTCCAAGGGCCCTGTTTGTCGACTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
ttctgaa
- - - - - - - - - catgtga
- - - - - - - - - - - - - - gctaccg
- - - - - - - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatcca