Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagttttcaaactgagacgtgcacgccttaggtcttagctattgctttacttcagatgccactgttatgatgtacacttgtcaattcattgttttgtagTGCGGTCCTTTGGGACCGAAGGTCGGAAGAAAGATGGAATGCAGATTCCTGCTAGCGACAAAGTATACGAGTATATCCTCTTTCGGGGAACTGATATCAA

Basic information

species Zea mays
transcript GRMZM2G051622_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051622_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g02090.2 (Oryza sativa), 3'ss of exon 1
tcagttttcaaactgagacgtgcac-gccttaggtcttagctattgctttacttcagatgccactgttatgatgtacacttgtcaattcattgttttgtagTGCGGTCCTTTGGGACCGAAGGTCGGAAGAAAGATGGAATGCAGATTCCTGCTAGCGACAAAGTATACGAGTATATCCTCTTTCGGGGAACTGATATCAA
|||  | |  | ||  |   |||    | |   |   |       |||||  |           |  | | |        |||| |||  ||||| | |||| || || ||||| |||||||| || |||||||||||| |||| ||||||||||||  |||||| || ||||| || || || ||||||| |||||||||
tcaagtgttga-ctacgctttgctttacttccagcactgttagacgctttgttcatcccaatgtttgttttacacctgtctgtccatttgttgttctctagTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGGAGTGCAAATTCCTGCTAGCACCAAAGTTTATGAGTACATACTTTTCCGGGGAAGTGATATCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttacttcagatgccactgttatgatgtacacttgtcaattcattgttttgtagTGCGGTCCTTTGGGACCGAAGGTCGGAAGAAAGATGGAATGCAGATTCCTGCTAGCGACAAAGTATACGAGTATATCCTCTTTCGGGGAACTGATATCAA
                                            ttgtttt  CT-rich tract
                                      aattcatt  TA-rich tract