Sequence
atgc intronic sequence ATGC exonic sequence...aagccgctcagctggagatgcaggtgcggcggtggataggatagctgatgtatatatatggatgaaccttgcagcttaattagtcgtatgagcttgatggGCATGCATGGACGACGGATCGTCATCAGAGCGCGTCTTGGCTTGCAGTGTGGTGTGTTGATCTTGCATCGATCAATCCATTTTCTTTCCTGTTGCGGTGT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166529942|gb|EG245826.1|EG245826EST: GCGCGGGGCGGTGCTGGTGGTGCGGCGCCCGCCGCTGCGAGGCCGTGCAG GCATGCATGGACGACGGATCGTCATCAGAGCGCG
genomic: GCGCGGGGCGGTGCTGGTGGTGCGGCGCCCGCCGCTGCGAGGCCGTGCAGgtgcccatca ... agcttgatggGCATGCATGGACGACGGATCGTCATCAGAGCGCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatgtatatatatggatgaaccttgcagcttaattagtcgtatgagcttgatggGCATGCATGGACGACGGATCGTCATCAGAGCGCGTCTTGGCTTGCAGTGTGGTGTGTTGATCTTGCATCGATCAATCCATTTTCTTTCCTGTTGCGGTGT
gcttaat putative branch site (score: 4)
tatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagccgctcagctggagatgcaggtgcggcggtggataggatagctgatgtatatatatggatgaaccttgcagcttaattagtcgtatgagcttgatggGCATGCATGGACGACGGATCGTCATCAGAGCGCGTCTTGGCTTGCAGTGTGGTGTGTTGATCTTGCATCGATCAATCCATTTTCTTTCCTGTTGCGGTGT
- - - -tcagctg
- - - - - - - - gatgcag
- - - - - - - - - - - -gtgcggc
- - - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcagc